Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2641 ATGTCGACAACAAACAACGTGGTGGTTCTAGACAACGGCGGCGGCCTCATAAAAGCGGGGCTGGGTGGCGAACGCGACCCCTCCGCCATTCTCCCAAACTGCCTCTACCGTCCCCCAGCCTCCAAAAAATGGGTCCACCCAAACCCCCTGAACTCTGGCAACCAAGACCTGACCTCCGCTGCCGTGCGCCGCCCCATGGACCGAGGGTACCTCATAAACCCAGACCTTCAGCGCGAAATCTGGTCCCACCTATTCTCTTCCATACTGCACATAAACCCTTCCAACTCCTCTCTCCTCCTCACCGAACCCGTCTTCACTCTTCCCTCCATCCAACGCTCCCTCGACGAACTCGTCTTCGAAGACTTCAACTTCCGCTCCCTCTACGTCGCCCACTCCCCCTCCCTCGTTCACCTCTACCAGACCACCCAGAGGCCCAATGAGCTTCTCTCCAAGGCCCAATGCAGCCTCGTCGTCGACTCCGGCTTCTCCTTCACTCACGCCTCCCCCGTCTTCCAAAACTTCACCCTTAATTACGCCGTCAAGCGAATCGATTTGGGCGGCAAAGCCCTCACCAATTACCTCAAGGAACTCGTCTCCTTCCGCTCCGTTAACGTCATGGAGGAGACCTTCATCATCGACGACGTCAAAGAGAAGCTCTGCTTCGTTTCCCTCGACCTGCAACGCGACCTCAACATTGCAAGGAAGAGTGGAAAAGAGAATCTCTTGAGGTGCACCTATGTGCTTCCGGATGGTGTTACCTACACGAAAGGGTTTGTTAAGTATCCGGATCAGGCGCGGCAATATCTTAAACTGGCGGAGGGTGGTGTTCCTTCTTCTCCCCCGGTGGATACCGACGGGGATACGAAAATGGCGGCATTTGCTGAGCAGCCGGAGGACAGGAACAGAGTAGATTTGATGAAAAATGAATTTGACTTGACAAACGAACGGTTTCTTGTCCCAGAGATGATATTCCGTCCTGCTGATTTGGGAATGAACCAGGCTGGGCTAGCAGAATGCATTGTGCGAGCTGTTGATTCTTGCCATCCACATCTCCACCCTGTACTCTATGAAAGCATCATTTTAACTGGTGGAAGCACCTTATTTCCTCAGTTTGCTGAGAGACTAGAGAAGGAGCTTCGGCCTCTAGTTCCTGATGACTTTCATGTGAAGATAACTACTCAAGAAGATCCCATACTCGGTGTTTGGCGTGGAGGGTCACTGTTGGCATCGAGTCCAGATTTTGAAGCAATGTGTGTGACCAAGTCTGAGTATGAGGAGCTTGGTTCTGCTAGATGTCGCAAGAGATTCTTTCATTAA 1317 0.5254 MSTTNNVVVLDNGGGLIKAGLGGERDPSAILPNCLYRPPASKKWVHPNPLNSGNQDLTSAAVRRPMDRGYLINPDLQREIWSHLFSSILHINPSNSSLLLTEPVFTLPSIQRSLDELVFEDFNFRSLYVAHSPSLVHLYQTTQRPNELLSKAQCSLVVDSGFSFTHASPVFQNFTLNYAVKRIDLGGKALTNYLKELVSFRSVNVMEETFIIDDVKEKLCFVSLDLQRDLNIARKSGKENLLRCTYVLPDGVTYTKGFVKYPDQARQYLKLAEGGVPSSPPVDTDGDTKMAAFAEQPEDRNRVDLMKNEFDLTNERFLVPEMIFRPADLGMNQAGLAECIVRAVDSCHPHLHPVLYESIILTGGSTLFPQFAERLEKELRPLVPDDFHVKITTQEDPILGVWRGGSLLASSPDFEAMCVTKSEYEELGSARCRKRFFH* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2641 438 Pfam Actin 5 437 IPR004000 -
Apr1g2641 438 SUPERFAMILY Actin-like ATPase domain 153 437 IPR043129 -
Apr1g2641 438 Gene3D - 2 183 - -
Apr1g2641 438 SMART actin_3 5 437 IPR004000 -
Apr1g2641 438 Gene3D Actin; Chain A, domain 4 185 273 - -
Apr1g2641 438 Gene3D - 305 408 - -
Apr1g2641 438 PANTHER ACTIN-RELATED PROTEIN 6 8 434 IPR030054 GO:0005634|GO:0006338
Apr1g2641 438 SUPERFAMILY Actin-like ATPase domain 5 137 IPR043129 -
Apr1g2641 438 CDD NBD_sugar-kinase_HSP70_actin 8 197 - -
Apr1g2641 438 PANTHER ACTIN 8 434 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2641 Apr-Chr1 35752882 35755361 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2641 8 437 Cytoskeleton Gene Families AT5G09810 27.356 1.38e-47 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2641 K11662 - gmx:100819827 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2641 1 35752882 35755361 Apr1g2641 1 35752882 35755361 ECH