Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2626 ATGGAATCGGTATCATCTGCCTCGAACGCCAGTTCCCGTGGAAGTAAGACAAGGGAAATCGACGACCTACTCGCCGGGGTGGGTTACAAAGTGCGGTCATCGGAGCTGAGTCAAGTGGCGCAAAATCTGGAGCGTTTAGAGAACGTGATAGTGAACTCATCCACCGACATATCTCAACTGGCTTCGGAAACGGTACTCTACGATCCCTCAGACATAGGTTCGTGGGTGGACACACTCCTCTCGGAGTTGGACCAAACAGTGTCCATACCCTACGAACTCTCTCAGCTACCTCAACTCGCCACAGATCAAAGCCATCAACTAACGCTGGTAACAACCGTGGAAGAAGACTCGGGAATAAGGCTCGTACACATGATGATGACGTGTGCAGATTCCGTGCAACGTGGCGACCTCTCATTCGCTGGCTCCCTCATCGAGGGCATGCAAGGGTTGTTAGCGCACGTCAACACCAACTGCGGCATCGGAAAAGTGGCTGGCTACTTCATCGATGCGCTGAGCCGCCGCATCTTGGCGCAAAACGTTTTCCTAAGCACACCTTACGAGAACGATGTGCTCTATCACCACTACTACGAGGCTTGTCCATACCTCAAGTTCGCTCATTTCACCGCCAACCAAGCCATCTTAGAAGCCTTCAACGGCCACGATTGCGTCCACGTCATCGACTTCAACCTCATGCAGGGTCTCCAATGGCCAGCGCTTATTCAGATCCTGGCGCTTCGTCCTGGTGGGCCCCCCCTCCTGCGTTTGACCGGCATCGGTCCTCCCTCGCCGGACGACCGCGACTCGCTCCGCGAAATAGGCCTGCGACTCGCCGAGTTGGCTCGCTCCGTCAACGTCCGCTTCGCGTTTCGCGGCGTGGCAGCGTGGCGCCTGGAGGATGTGAAGCCATGGATGCTTCAGGTGAGTCCCAAGGAGGCGGTGGCGGTGAACTCAATCATGCAGCTCCATCGACTTCTGGGGTCGGAATCCGACCCAGCTCGTTCGGGTTCGGGTATTGACGTGGTGTTGGGATGGATCCGGAGCTTGAACCCGAAGATCGTGACGGTAGTGGAGCAGGAAGCGAACCACAACGGTGAAGGGTTTTTGGAGCGGTTCACGGAAGCGTTGCATTATTACTCGACCGTTTTTGATTCGCTGGAGGCGTGTCCGGTGGAGCCGGATAAGGCGCTGGCGGAGATGTATCTGCAGAGAGAGATTTGCAACGTGGTGTGCTGCGAGGGAGCGGCTCGGGTCGAGAGACACGAGCCGCTGGCTAAGTGGAGGGAGCGGCTCGGGAGAGCCGGCTTCAGACCCTTGCATTTGGGTTCCAATGCGTTCAAGCAAGCCAGCATGTTGTTGACTCTCTTCTCTGCGGAGGGTTACTGCGTTGAAGAGAACCAAGGGTGCTTGACTCTGGGCTGGCATAGCCGCTCTCTGATTGCGGCTTCGGCTTGGCAAGCCGCGCCGCTCCTGGATGGCGAAACGCTGCGTTTTGATCGCTGA 1500 0.5693 MESVSSASNASSRGSKTREIDDLLAGVGYKVRSSELSQVAQNLERLENVIVNSSTDISQLASETVLYDPSDIGSWVDTLLSELDQTVSIPYELSQLPQLATDQSHQLTLVTTVEEDSGIRLVHMMMTCADSVQRGDLSFAGSLIEGMQGLLAHVNTNCGIGKVAGYFIDALSRRILAQNVFLSTPYENDVLYHHYYEACPYLKFAHFTANQAILEAFNGHDCVHVIDFNLMQGLQWPALIQILALRPGGPPLLRLTGIGPPSPDDRDSLREIGLRLAELARSVNVRFAFRGVAAWRLEDVKPWMLQVSPKEAVAVNSIMQLHRLLGSESDPARSGSGIDVVLGWIRSLNPKIVTVVEQEANHNGEGFLERFTEALHYYSTVFDSLEACPVEPDKALAEMYLQREICNVVCCEGAARVERHEPLAKWRERLGRAGFRPLHLGSNAFKQASMLLTLFSAEGYCVEENQGCLTLGWHSRSLIAASAWQAAPLLDGETLRFDR* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2626 499 PANTHER OS05G0574900 PROTEIN 5 489 - -
Apr1g2626 499 Coils Coil 43 63 - -
Apr1g2626 499 SMART DELLA_2 21 93 - -
Apr1g2626 499 ProSiteProfiles GRAS family profile. 112 485 IPR005202 -
Apr1g2626 499 Pfam Transcriptional regulator DELLA protein N terminal 21 86 IPR021914 -
Apr1g2626 499 Pfam GRAS domain family 121 485 IPR005202 -
Apr1g2626 499 Gene3D - 19 83 IPR038088 -
Apr1g2626 499 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 5 489 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2626 Apr-Chr1 35649223 35651190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2626 20 485 GRAS Transcription Factor Family AT1G14920 49.708 9.93e-165 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Apr1g2626 GRAS 2.6e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2626 K14494 - gmx:100805968 806.979