Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2625 ATGAAGGACCCAGAAGAGCACCACCAAGTGAAATCTAGAAGGCCTCTTCAGAAATCCACAGAACGTAGCAGAAGGAGTAGAAGAAGATCAAGCCAGTGCAAGCCAGAGAAATTACAAGAAACACAACTTGATTTCTCTGCTACTTGCAAGAGTCTTGTGTTTCATCGCAGGCCTGGCTTTGGCCAACTTGGGACTAAGTGTCTCATCAAAGCTAACCACTTCCTTGCAGATATATCTGTATCTGACTTGATCCATTACAATGTTAAAATAACACCTGAAGTGAGTTCTCGTAAAACAAACAAGGCTATCATAGCAGAGTTGGTGAGGCTTCACAAGAACAATGAATTGGCCACGAGGCTCCCTGTGTATGATGGAGGAAGAAACCTTTACACTGCTGGTTTGCTTCCATTTACATACAAAGAGTTCAATGTTATGTTGAGCGAGGGTGACGATGTTACCGGTAGTAGCAGGCAAAGAGAGTTTAGGGTGGCAATCAAGTATGCAACTCGTGTTAGCATGCATCAACTACATGAGCTTCTTAGTGGGAAACAAGTGGACACCCCACAAGAAGCACTAAGCGTTTTTGATATTGTGTTAAGAGAGCTTGCGGCTCAGAGTTACGTGTCAATTGGGAGGTTTCTCTATTCTTCTGATGTAAGAAAACCACAGCAGCTGGGTGGTGGTTTGGAGTCATGGCGTGGCTTTTACCAGAGTATAAGGCCCACTCAGATGGGGTTGTCACTTAACATTGATATGTCATCAATGGCATTTATTGAACCCCTTCCTGTAATTGACTTTGTGGCTCAAATTTTGGGAAAAGATGTTCACTCAAAACCCTTGTCAGATGCAGACCGTGTCAAGATTAAGAAGGCCCTAAGAGGTGTAAAAGTTGAAGTTACACATAGAGGAAATTTTCGAAGGAAGTATAGGATATCAGGACTGACTTCACAGCCTACGAGGGAGCTTATTTTCCCTCTTGATGAGCAAATGAACATGAAATCGGTAGTTGATTATTTTCAAGAAATGTATGGATATACAATAAAATATTCTCACCTACCTTGCCTTCAAGTAGGAAGCCAAAGGAAGGTGAACTATTTGCCAATGGAGGCGTGCAAGATAGTTGGGGGCCAGAGATATACAAAAGGGCTAAATGAAAAGCAGATTACTTCTCTGCTAAAGGTCTCATGCCAGAGACCCCGTGAACAAGAGACAGACATTTTACAGACAATTCAACAAAACAATTACGAGAATAATCCCTATGCAAAGGAGTTTGGCATCAGCATAGACAGCAAGCTTACATCAGTTGAGGCTCGTGTTCTTCCAGCTCCATGGTTAAAATATCATGACACTGGAAGAGAGAAAGAATACTTGCCTCAAGTTGGTCAGTGGAATATGATGAATAAGAAAGTTATAAATGGAAGTACTGTAAGATATTGGGCCTGTATCAATTTCTCACGAAGTGTTCAGGAAAGTACAGCCCGCGGATTTTGCCAACAGTTAGTTCAGATGTGCCAAATTTCAGGCATGGAATTCAGTCAGGACCCAGTTATTCCTATATATTCAGCAAGACCAGATCAGGTAAAGAAAGCTTTGAAGTATGTACATTCTGCTGCTATAGACAAACTTGATGGGAAAGAGTTGGAGTTGCTGATTGCCATTCTTCCAGACAATAATGGCTCTCTATATGTTTTTTCTGTGAAGCAAAATTATTCCATGCTTGCATTAAAGAAACAAACTCCTCATCCAGGTGATCTCAAAAGAATCTGTGAAACAGATCTGGGGTTGATTTCTCAATGCTGCCTTACAAAACATGTATTCAAGATTAATAGACAGTACCTGGCTAATGTGGCACTTAAAATCAATGTCAAGATGGGAGGAAGAAACACTGTACTTTTGGATGCTTTAAGTTGGAGGATTCCATTGGTTAGTGATATTCCAACAATAATATTTGGAGCTGATGTAACCCATCCTGAATCTGGAGAGGATTCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCTGAAGTAACAAAGTATGCAGGGTTGGTTTGTGCTCAGCCTCATCGCGAAGAACTCATTCAAGATCTTTTCAGATGTTGGAAAGATCCACAGAGAGGTGTAGTTTATGGTGGTATGATCAGGGAGCTTTTACTATCATTTAAGAAGGCAACTGGACAAAAACCATTGAGAATAATCTTTTACAGAGATGGAGTAAGTGAAGGACAGTTCTACCAGGTTTTGCTATATGAGCTTGATGCCATCCGCAAGGCTTGTGCATCTCTGGAACCTAGTTACCAACCTCCAGTAACATTTGTCATTGTTCAAAAACGGCATCACACTAGACTCTTTGCAAGCAATCACGACGACAGAAACAGCACTGATAAGAGTGGAAATATCTTACCTGGTACTGTGGTGGATTCTAAGATCTGTCATCCTACAGAATTCGACTTCTACTTATGCAGTCACGCTGGAATTCAGGGTACAAGTAGACCAGCACACTATCATGTTCTCTGGGACGAAAACAATTTCACTGCTGATGAGATTCAGTCTCTAACCAACAACTTATGCTACACTTACGCAAGATGTACGCGGTCTGTTTCTGTAGTGCCTCCAGCATACTATGCTCATCTAGCAGCATACAGAGCTCGATTCTACATGGAACCTGAAGTTGCGGAGATTGCTAAGCTGCGAGGTACGAGATCGAAAGAAGGGTCCGTTCGGCCACTGCCTGCTCTGAAAGAGAAGGTGAAGAATGTAATGTTTTACTGTTGA 2781 0.42 MKDPEEHHQVKSRRPLQKSTERSRRSRRRSSQCKPEKLQETQLDFSATCKSLVFHRRPGFGQLGTKCLIKANHFLADISVSDLIHYNVKITPEVSSRKTNKAIIAELVRLHKNNELATRLPVYDGGRNLYTAGLLPFTYKEFNVMLSEGDDVTGSSRQREFRVAIKYATRVSMHQLHELLSGKQVDTPQEALSVFDIVLRELAAQSYVSIGRFLYSSDVRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVHSKPLSDADRVKIKKALRGVKVEVTHRGNFRRKYRISGLTSQPTRELIFPLDEQMNMKSVVDYFQEMYGYTIKYSHLPCLQVGSQRKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQTIQQNNYENNPYAKEFGISIDSKLTSVEARVLPAPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESTARGFCQQLVQMCQISGMEFSQDPVIPIYSARPDQVKKALKYVHSAAIDKLDGKELELLIAILPDNNGSLYVFSVKQNYSMLALKKQTPHPGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFRCWKDPQRGVVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVIVQKRHHTRLFASNHDDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPEVAEIAKLRGTRSKEGSVRPLPALKEKVKNVMFYC* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2625 926 Gene3D - 638 926 IPR036397 GO:0003676
Apr1g2625 926 SMART Piwi_a_2 570 890 IPR003165 GO:0003676
Apr1g2625 926 CDD PAZ_argonaute_like 260 374 - -
Apr1g2625 926 MobiDBLite consensus disorder prediction 1 37 - -
Apr1g2625 926 SMART DUF1785_2 208 260 IPR014811 -
Apr1g2625 926 Pfam Argonaute linker 2 domain 403 447 IPR032472 -
Apr1g2625 926 PANTHER PROTEIN ARGONAUTE 10 18 925 - -
Apr1g2625 926 Pfam Argonaute linker 1 domain 209 258 IPR014811 -
Apr1g2625 926 Gene3D - 439 632 - -
Apr1g2625 926 CDD Piwi_ago-like 419 889 IPR045246 -
Apr1g2625 926 Gene3D paz domain 255 379 - -
Apr1g2625 926 ProSiteProfiles Piwi domain profile. 549 890 IPR003165 GO:0003676
Apr1g2625 926 SUPERFAMILY Ribonuclease H-like 538 890 IPR012337 -
Apr1g2625 926 SMART PAZ_2_a_3 265 397 IPR003100 GO:0005515
Apr1g2625 926 MobiDBLite consensus disorder prediction 1 19 - -
Apr1g2625 926 Pfam N-terminal domain of argonaute 66 199 IPR032474 -
Apr1g2625 926 ProSiteProfiles PAZ domain profile. 261 375 IPR003100 GO:0005515
Apr1g2625 926 Pfam Mid domain of argonaute 458 535 IPR032473 -
Apr1g2625 926 Pfam Piwi domain 577 889 IPR003165 GO:0003676
Apr1g2625 926 SUPERFAMILY PAZ domain 256 415 IPR036085 GO:0005515
Apr1g2625 926 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 18 925 - -
Apr1g2625 926 Pfam PAZ domain 265 391 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2625 Apr-Chr1 35635736 35647540 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2625 54 926 Eukaryotic Initiation Factors Gene Family AT5G43810 73.326 0.0 1390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2625 K11593 - gmx:100813485 1687.16