Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2624 ATGGCATCACAAGCAGAATTAAGCATGGATTGCGAGCCTCGTAGCTATTCCACGTTGCTGAAGTCATTTGCTGATCAAACAGATCAAACCTACAAGCTCGAAGAATTCCTTTCTCGCTTAGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGCGAGCTTCCTCTTTGCATGCAACTCCTTACCAACGCTGTGGAGGCTTCAAGGCAGCAACTTCAGGCCTTCAGATCAAATCAAGGCACAAGGCCGGTTCTGGAAGAATTCATACCAATGAAGCATTCAAACTCGCAAGAAATTATTCAGTCTCATGAAAAGGCATCAAACATTTGTGATAAGGCAAATTGGATGACATCGGTTCAACTATGGAGCCAAGCAAGCGAAGGAACCAAACCACAATCCACAATCACATCTCCAAAAGAAGCTGATATTGGGTTTAGCGTAAGCCCTAAGCAAGCACTAAACAACAAACATAAGAACGGAGGAGCATTCCTACCATTCTCAAAAGAAAGAAACTCGTGCCAAGGATTAAGGGGTCCTTCTGAGAAAGAAATGGAGGACAAGAAATGTGAAAAGGCAGAGAAGAACTGTGGAGGGGTTGTTGAACAGGGAAAAAGTGCTGCAGTTGTATCTGAGGCACAAACCACAAATCCTACTGTCACCACAATAATCAACACCGGTGGCCAAACACAAAGGAAAGCAAGAAGGTGCTGGTCACCGGACTTGCACCGCCGATTTGTTCACGCTCTTCAAATGCTCGGTGGATCACAAGTAGCCACCCCAAAACAGATTAGGGAGTTGATGAAGGTTGATGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCACACAAGAAGACCCAGTCCAAGCATACAAAATGGAGCACCCACACCCCAGCTTGTAGTCCTTGGAGGAATTTGGGTACCACCGGAGTATGCCAATACTGGTGGTTCAGCAATATATGCCACCCACCCTACCTCACATGCGCCACCACCACACTATTGTGCGGCCACCCCAGTACCCCAAGAGTTCTACAGTGCTACTCCGTCTCCGTCGTTGTTACCGTTGCCGCCACACCACCATCTTCACATGTACAAGACGGTGCCGCAGATTGGGTGCTCACCGGAATCCGATGTTCGGGGCGGTGACTGCTCAGAAAGCATAGAGGATGGGAAGTCAGAGAGTAGTAGTTGGAAAGGAGAGAGTGGAGAGAACAAAGGAGAAAAGATAGGGTTGGCTGCACTTAGAGAGCAAGATGGGGAAGAGAGCACTGGGAGTGAGATCACTCTCAAATTCTAG 1311 0.4737 MASQAELSMDCEPRSYSTLLKSFADQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAVEASRQQLQAFRSNQGTRPVLEEFIPMKHSNSQEIIQSHEKASNICDKANWMTSVQLWSQASEGTKPQSTITSPKEADIGFSVSPKQALNNKHKNGGAFLPFSKERNSCQGLRGPSEKEMEDKKCEKAEKNCGGVVEQGKSAAVVSEAQTTNPTVTTIINTGGQTQRKARRCWSPDLHRRFVHALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSIQNGAPTPQLVVLGGIWVPPEYANTGGSAIYATHPTSHAPPPHYCAATPVPQEFYSATPSPSLLPLPPHHHLHMYKTVPQIGCSPESDVRGGDCSESIEDGKSESSSWKGESGENKGEKIGLAALREQDGEESTGSEITLKF* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2624 436 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 232 287 IPR006447 GO:0003677
Apr1g2624 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 229 289 IPR017930 -
Apr1g2624 436 Coils Coil 33 53 - -
Apr1g2624 436 Gene3D - 231 289 - -
Apr1g2624 436 MobiDBLite consensus disorder prediction 386 430 - -
Apr1g2624 436 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 436 IPR044787 GO:0003700|GO:0006355
Apr1g2624 436 Coils Coil 58 78 - -
Apr1g2624 436 Pfam Myb-like DNA-binding domain 234 285 IPR001005 -
Apr1g2624 436 SUPERFAMILY Homeodomain-like 229 290 IPR009057 -
Apr1g2624 436 MobiDBLite consensus disorder prediction 377 436 - -
Apr1g2624 436 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2624 Apr-Chr1 35624326 35627257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2624 1 436 G2-like Transcription Factor Family AT2G03500 49.892 5.09e-118 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr1g2624 Myb_DNA-binding 1.4e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2624 - - gmx:100815048 630.943