Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2612 ATGGGTTTGCTTCCATTTTCTATGGTTTTATTTCTCTATTTAATTATTGTTCATTTTGGAGTTTATGGGGAGGAAAACGTGACACTAGTGAATGAAAAAAATTCACTTGTGTCATTCATGTCATGCATTGTTTCTGACCCCAAAAACGTTCTAAAGAGTTGGAACTCACCAAGGGTACATGTTTGCAATTGGTATGGCGTCAGATGCAACAATGCAAGTGACATGATCATAGAGCTTGCTCTTAATGGAAGCTCACTAGGGGGCACAATTTCCCCTGCTCTTTCTAACATCTCTTCCTTGCAAATTCTTGATCTTTCTGAGAATTTTTTTGTGGGTCACATTCCAAAGGAATTGGGCTATTTGATTCAGCTTCAACAACTTAGTTTATCTTGGAATTTTCTTCAAGGGCAAATCCCCTCTGAGTTGGGTTCTCTTCACAACTTGTACTACATTAACATGGGAAGTAACCGACTTGAGGGTGATATTCCCCCATCACTTTTCTGCAATGGGTCTTCCACACTGAGGTATATAGACCTCTCTAACAATTCTATAGGAGGACAAATACCCTTGAGCAATGAGTGTATCCTCAAAGAACTTAGGTTCCTCTTGCTTTGGTCTAACAAGTTTGTAGGCCGAGTCCCTTTAGCTCTTTCCAACTCCACAAAACTTAAATGGCTCGACTTGGAGTCAAATCGGTTGAGTGGAGAGCTACCATCTACGATTGTAAGCAATTGGCCACAACTACAATTCCTCTACCTATCATATAATGACTTTGTTAGCCATGATGGTAACACCAACCTTGAACCTTTCTTTTCTTCCTTGATGAACTTGTCTTACATGCAAGAACTTGAGTTGGCGGGAAACAATCTTGGAGGGAAGCTACCCAGTAAAATTGGTGATCTTCCCACCAGCTTGTTACAACTTCACCTAGAAGACAATCTCATATATGGTTCTATACCTCCAAACATAGCAAAACTTGTCAACCTGACTCTCTTGAACTTTTCTAGTAACTTGCTAAATGGATCAATACCTCCCAGTCTCTGTCAGATGGGGAGGCTAGAGAGAATTTATTTGTCAAACAACTCACTATTTGGGATGATTCCTTCTACCCTTGGTGGCATTCAGCATCTGGGACTTCTTGACTTGTCGAGAAACAAGCTTTCTGGCTCAATACCAGACACTTTTGCTAACCTAACCCAGTTAAGAAGGCTTTTACTTTATGACAACCAGCTTTCTGGAACCATCCCACCAAGTTTGGGAAAATGTGTCAATTTAGAGATTTTGGACTTGTCCCACAACAAGATTTCAGGGATGATCCCTAAAGAAGTTGCAGCCTTGTCTAGCTTGAAACTTTACTTGAACCTATCAAGCAATAACTTAGATGGGCCTTTACCATTAGAGCTCTCCAAAATGGACATGGTGCTAGCTATTGACCTATCCATGAACAATCTCTCCAGCAGAATCCCACCACAGCTTGAAAGTTGCATAGCAATAGAGTACCTTAACCTTTCTGGTAACTCCTTAGAAGGCCCTCTCCCAGATTCATTAGGCCATTTGCCTTATATTCAAGAACTTGATGTGTCTTCAAATCAATTGACAGGGGTAATACCACAGTCCCTTCAGTTGTCCTCCACTCTCAAGAAACTCAACTTCTCTTTCAACAAATTCTCAGGGTGTGTCTCAAACAAGGGAGCATTTTCATCTTTGACCATAAACTCTTTCCTAGGAAATGATGCTCTTTGTGGCTTGGTAAAAGGCATGCAAAGCTGCCACACGAAACATAAATATCATTTGGTTCTCTTATTAATTCCAGTGTTACTATTTGGCACTCCCTTGCTATGTATGTTGGGGTACCCCACAATAATTAAGCCAAAAGTCCAAAAGCAATTGGAAATAGTCAACAGAGGGGACTTGGAGGATGAAGATGAGGAAACAAAGGAGCTCAAGTACCCAAGAATTTCTTATAGACAACTTCTTGAAGCCACAGAAGGCTTCAGTGCTTCAAGCCTAATTGGTTCGGGTCGGTTTGGACAGGTCTACAAAGGAGTTCTCCGAGATAATACAAGAATAGCAGTGAAGGTGTTAGACGCAAGAACAGCTGGTGAGATTTCTGGGAGCTTTAGAAGGGAATGTCAAATCCTGAAAAGGACTAGGCACAGAAATTTAATAAGGATCATCACAATTTGCAGTAAAAAAGAGTTTAAGGCTCTTGTTCTTCCACTGATGCCAAATGGTAGTCTTGAGAGCCACTTATATCCGAGCCATGGGTTAAGCCAGAGGTTGAATATGGTTCAGTTGGTGAGGATCTGCAGTGATGTAGCTGAGGGAATGGCCTATCTGCACCACTATTCTCCGGTTAGAGTAGTGCACTGTGATCTTAAGCCAAGCAATATACTTTTGGATGATGATTTAACAGCTTTGGTAACTGATTTTGGTATTGCAAGGCTTGTAAAAGGTGAGGAGAACATGCTCACTAGTGACACCACATCTTTCAGTTCCACACATGGTTTGTTATGTGGCTCCGTTGGCTACATTGCCCCGGAGTATGGAATGGGAAAACATGCATCAACTCAGGGTGATGTATACAGTTTTGGGGTGCTTATGCTAGAAATAGTGGCAGGTAAACGCCCCACGGATGTCCTTATCCATGAAGGGTCTTGCTTGCATGAGTGGGTTAAGAGGCAATATGCACACAGACTTGAGAACATTGTTGAACAAGCATTGAAAAAATACTCTCATTCTGGCATGCCAAGTCACCATCACAAAATTGGGCAAGATGTTATACTGGAACTCATTGAGTTGGGGCTTCTTTGCACGCATCAAAATCCTTCAACAAGACCAAGTATGTTGGATGTAGCCCAAGAAATGGGGAGGTTGAAGGACTATCTTTCTAATCAATCTTTTGTGCTGATTGAAGATAAACTTAAATCGGAAAATAAGTAA 2943 0.4132 MGLLPFSMVLFLYLIIVHFGVYGEENVTLVNEKNSLVSFMSCIVSDPKNVLKSWNSPRVHVCNWYGVRCNNASDMIIELALNGSSLGGTISPALSNISSLQILDLSENFFVGHIPKELGYLIQLQQLSLSWNFLQGQIPSELGSLHNLYYINMGSNRLEGDIPPSLFCNGSSTLRYIDLSNNSIGGQIPLSNECILKELRFLLLWSNKFVGRVPLALSNSTKLKWLDLESNRLSGELPSTIVSNWPQLQFLYLSYNDFVSHDGNTNLEPFFSSLMNLSYMQELELAGNNLGGKLPSKIGDLPTSLLQLHLEDNLIYGSIPPNIAKLVNLTLLNFSSNLLNGSIPPSLCQMGRLERIYLSNNSLFGMIPSTLGGIQHLGLLDLSRNKLSGSIPDTFANLTQLRRLLLYDNQLSGTIPPSLGKCVNLEILDLSHNKISGMIPKEVAALSSLKLYLNLSSNNLDGPLPLELSKMDMVLAIDLSMNNLSSRIPPQLESCIAIEYLNLSGNSLEGPLPDSLGHLPYIQELDVSSNQLTGVIPQSLQLSSTLKKLNFSFNKFSGCVSNKGAFSSLTINSFLGNDALCGLVKGMQSCHTKHKYHLVLLLIPVLLFGTPLLCMLGYPTIIKPKVQKQLEIVNRGDLEDEDEETKELKYPRISYRQLLEATEGFSASSLIGSGRFGQVYKGVLRDNTRIAVKVLDARTAGEISGSFRRECQILKRTRHRNLIRIITICSKKEFKALVLPLMPNGSLESHLYPSHGLSQRLNMVQLVRICSDVAEGMAYLHHYSPVRVVHCDLKPSNILLDDDLTALVTDFGIARLVKGEENMLTSDTTSFSSTHGLLCGSVGYIAPEYGMGKHASTQGDVYSFGVLMLEIVAGKRPTDVLIHEGSCLHEWVKRQYAHRLENIVEQALKKYSHSGMPSHHHKIGQDVILELIELGLLCTHQNPSTRPSMLDVAQEMGRLKDYLSNQSFVLIEDKLKSENK* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2612 980 ProSiteProfiles Protein kinase domain profile. 665 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2612 980 SMART serkin_6 665 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2612 980 Gene3D Transferase(Phosphotransferase) domain 1 742 975 - -
Apr1g2612 980 Pfam Leucine Rich Repeat 499 519 IPR001611 GO:0005515
Apr1g2612 980 SMART LRR_typ_2 519 542 IPR003591 -
Apr1g2612 980 SMART LRR_typ_2 423 446 IPR003591 -
Apr1g2612 980 SMART LRR_typ_2 374 397 IPR003591 -
Apr1g2612 980 SMART LRR_typ_2 326 350 IPR003591 -
Apr1g2612 980 SMART LRR_typ_2 121 145 IPR003591 -
Apr1g2612 980 SMART LRR_typ_2 398 422 IPR003591 -
Apr1g2612 980 SMART LRR_typ_2 221 244 IPR003591 -
Apr1g2612 980 Pfam Leucine Rich repeat 422 436 IPR001611 GO:0005515
Apr1g2612 980 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Apr1g2612 980 SUPERFAMILY RNI-like 79 364 - -
Apr1g2612 980 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 22 960 - -
Apr1g2612 980 Gene3D Ribonuclease Inhibitor 29 195 IPR032675 -
Apr1g2612 980 SUPERFAMILY Protein kinase-like (PK-like) 646 954 IPR011009 -
Apr1g2612 980 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Apr1g2612 980 SUPERFAMILY L domain-like 327 583 - -
Apr1g2612 980 PANTHER OS04G0122200 PROTEIN 22 960 - -
Apr1g2612 980 CDD STKc_IRAK 671 959 - -
Apr1g2612 980 Gene3D Phosphorylase Kinase; domain 1 636 740 - -
Apr1g2612 980 Gene3D Ribonuclease Inhibitor 196 593 IPR032675 -
Apr1g2612 980 Pfam Protein kinase domain 667 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2612 980 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Apr1g2612 980 Pfam Leucine rich repeat 352 411 IPR001611 GO:0005515
Apr1g2612 980 ProSiteProfiles Leucine-rich repeat profile. 424 445 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2612 Apr-Chr1 35532582 35535973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2612 32 961 Receptor kinase-like Gene Family AT3G47570 35.083 6.26e-161 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Apr1g2612 Pkinase 2.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2612 - - lang:109346572 1481.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2612 1 35532582 35535973 Apr1g2612 1 35532582 35535973 ECH