Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2606 ATGCAAACCCAAACCTCTCTCACCATACTTGCACACTGCTTCCATTCCTCACTCACCATGGAAGCTAGGACTGGACTTTTTGCAGGAACTCCAAACAGCAATGAGCTTGTGGTCATCCAAGGACATGATGAGCGTAAGCCTGTGAAAAACTTAGATGGTCAGCTATGTGAGATATGTGGCGATTGTGTGGGACTTACAGTGGATGGAGACTTATTTGTAGCTTGTGAAGAGTGTGGTTTCCCTGTGTGTAGGCCATGTTATGAGTATGAAAGAAGGGAAGGGACTCAAGTTTGTCCTCAATGCCATACAAGATACAAGCGTATCAAAGGAAGCCCAAGAGTGGAGGGAGATGAAGATGAAGATGATGTGGATGACATTGAGCATGAATTCAAAATGGAAGAAGAAAAGTACAAGCTTAAGCATGAAGAGATGCTGCAAGGGAAGATGATTCATGGAGATGATCATGGAAATGCTAGATCAAAACCGGTCTATGGGGACCTACCCATATCTTCTCACAGTGGAGAACCAGGTGGTGCAAAATTTGATGAAAAGGAGAAAACAGATGAGTGGAAGTTGCACCAAGGCAATCTGTGGCCTGAAACTGATGCCTCAGTTGATCCAGAAAAGGCCATGAAAGATGAAGCTAGACAGCCACTCTCAAGGAAAGTAGCAATACCTTCAGGCAAACTAAGTCCTTATAGAATGATGGTTACGGCTCGGCTCCTCCTTCTGTTACTCTTCTTTCAGTACAGAATCTTCCACCCTGTACCTGATGCAATTGGACTATGGTTCACATCTGTGACATGTGAAATCTGGCTTGCATTATCATGGATAATTGATCAGCTTCCAAAATGGTTTCCCATTAACCGTGAGACCTACCTTGATCGTCTTTCAATCAGGTTTGAACCGGAGAACAAGCCCAATATGCTTTCTCCAATCGATATCTTTGTAACTACTGTAGATCCAATCAAGGAACCTCCTCTAGTTACAGCCAACACAGTTCTTTCAATCTTGGCCTTGGATTACCCTGCTGACAAAATCTCATGCTACGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACTGCTGAATTTGCCAGAAAATGGGTACCTTTTTGCAAAAAATTCTCTGTAGAACCTAGAGCACCAGAGAAGTACTTCTCTGAGAAGATAGATTTTCTAAAGGATAAGCTTCAGTCTACATATGTAAAAGACCGTCGCACAATGAAGAGAGAATATGAAGAATTTAAGGTGAGGATAAATGCACTTGTGGCTAAATCCATGAGAATTCCCCTAGAAGGATGGACTATGAAAGATGAGACACCATGGCCAGGAAACAACACCAAAGATCATCCAAGTATGATACAAATCCTTCTTGCTCAGAGTGGAGGCCATCAAGGTAATGAGCTTCCATGTCTTGTCTACATGTCTCGTGAGAAAAGGCCTGCATTTCAACCCCACGGCAAAGCCGGCGCAATTAATGCCTTGCTTCGCGTATCAGCAGTGCTAAGCAATGCTCCTTTTGTGTTGAACTTGGATTGCAATCATTATGTGAATAACAGCAAAGTCGTGAGAGAGGCCATGTGTTTCTTCATGGACATACAACTTGGGAATGGCATTGGCTTTGTCCAGTTTCCATTAAGATTTGACAGCCTAGATAGGAACGATCGTTATGCGAACAAAAACACTGTTTTATTTGATATTAACTTGAGGTGCCTAGATGGAATTCAGGGACCTTCTTATGTTGGTTCAGGATGTATCTTTAGAAGGAAGGCTTTAACTGGCTTTGATGCTCCAAAGGCTTCAAAACGCCCACGAATGGTGCAAGTTCACTCCAAACAGGATGAGACTGGAGAGGATGCAACCATAACAGATGAGGACAAAGAGCTATTGAAGTCACAGATGAATGATGAAAACAAATTTGGGAAGTCCACACTTTTTATGAATTCTTCAATGACAGAAGAAGGTGGTGCTGATCCTTCTTCGAGTCAGGAAGCCCTGCTTAAAGAAGCCATTCATGTCATGGGTTGTAGATATGAAGACAGAACACTTTGGGGATACGAGGTGGGTTTGAGCTATGGATCAATAGCAACAGATACTTTGACAAGTTTGAAGATGCATTGTCAGGGTTGGAGGTCTGTGTACTGCATGCCAAAGAGAGATGCATTCAGGGGTACAGCTCCAATCAACCTTACCGATAGACTGAACCAGGTGCTTAGATGGGCACTGGGATCACTTCAGATCCTATTCAGCAGCCATTGTCCTCTCTTCTATGGCTTCAAGGGAGGAAGACTCAAGGGGCTCCAAAGAATTGCCTATATTAATAGCACTGTCTACCCGTTCACCTCAATCCCCCTCCTCATATATTGTCTCATTCCTGCCATCTGCTTGCTCACTGATAAATTCATCACACCATCGGTAGGCACATTTGCAAGTCTAATCTTCATTGCATTGTTCATCTCAATCTTTGCCTCAGCGATTCTGGAATTGAGATGGAGTGGAGTTAGCCTTGAGGAATGGTGGAGAAGCCAGCAATTTTGGGTGATTGGCAGTGTGTCAGCAAACCTCTTTGCCACTATGCAAGGCCTAATAGCAGCCCTGCCACTTGGTAGAGTAAACACAAACTTCAGCATTGTATCAAAGGCACCAGATGATGTAGAGTTTCGTGAACTCTATGCCATTAGATGGACAGCACTTCTAATACCTCCAACCACCATCATAATAATAAACCTCATTGGTATTGTAGCTGGCTTCACAGATTCCATAAATAGTGGTGAACATTCTTGGGGGGCACTGCTTGGAAAACTCTTCTTTTCTTTATGGGTTATTGTCCATTTGTACCCTTTCCTTAAAGGTCTAATGGGTAGGCAGAACAGAACACCAACACTTATTGTGATATGGTCTGTGCTTTTGGCTTCTATCTTCTCATTGGTTTGGGTCAGAATTGACCCTTTTGTGTTAAAAACAAAGGGGCCTGATGTCAAGCAATGTGGAATCAGTTGCTGA 3021 0.432 MQTQTSLTILAHCFHSSLTMEARTGLFAGTPNSNELVVIQGHDERKPVKNLDGQLCEICGDCVGLTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKMEEEKYKLKHEEMLQGKMIHGDDHGNARSKPVYGDLPISSHSGEPGGAKFDEKEKTDEWKLHQGNLWPETDASVDPEKAMKDEARQPLSRKVAIPSGKLSPYRMMVTARLLLLLLFFQYRIFHPVPDAIGLWFTSVTCEIWLALSWIIDQLPKWFPINRETYLDRLSIRFEPENKPNMLSPIDIFVTTVDPIKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFARKWVPFCKKFSVEPRAPEKYFSEKIDFLKDKLQSTYVKDRRTMKREYEEFKVRINALVAKSMRIPLEGWTMKDETPWPGNNTKDHPSMIQILLAQSGGHQGNELPCLVYMSREKRPAFQPHGKAGAINALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRNDRYANKNTVLFDINLRCLDGIQGPSYVGSGCIFRRKALTGFDAPKASKRPRMVQVHSKQDETGEDATITDEDKELLKSQMNDENKFGKSTLFMNSSMTEEGGADPSSSQEALLKEAIHVMGCRYEDRTLWGYEVGLSYGSIATDTLTSLKMHCQGWRSVYCMPKRDAFRGTAPINLTDRLNQVLRWALGSLQILFSSHCPLFYGFKGGRLKGLQRIAYINSTVYPFTSIPLLIYCLIPAICLLTDKFITPSVGTFASLIFIALFISIFASAILELRWSGVSLEEWWRSQQFWVIGSVSANLFATMQGLIAALPLGRVNTNFSIVSKAPDDVEFRELYAIRWTALLIPPTTIIIINLIGIVAGFTDSINSGEHSWGALLGKLFFSLWVIVHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRIDPFVLKTKGPDVKQCGISC* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2606 1006 SUPERFAMILY RING/U-box 40 126 - -
Apr1g2606 1006 SUPERFAMILY Nucleotide-diphospho-sugar transferases 325 825 IPR029044 -
Apr1g2606 1006 Coils Coil 411 431 - -
Apr1g2606 1006 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 302 409 IPR029044 -
Apr1g2606 1006 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 452 626 IPR029044 -
Apr1g2606 1006 Pfam Zinc-binding RING-finger 46 123 IPR027934 -
Apr1g2606 1006 Pfam Cellulose synthase 313 1000 IPR005150 GO:0016020|GO:0016760|GO:0030244
Apr1g2606 1006 PANTHER CELLULOSE SYNTHASE 20 1006 - -
Apr1g2606 1006 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 20 1006 - -
Apr1g2606 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 129 IPR013083 -
Apr1g2606 1006 CDD mRING-HC-C4C4_CesA_plant 54 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2606 Apr-Chr1 35474031 35480600 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2606 20 1006 Cell Wall Biosynthesis AT5G17420 65.474 0.0 1395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2606 K10999 - gmx:100777270 1754.57