Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2605 ATGGAGGCCAGCGCTGGACTAGTCGCTGGGTCACATAACCGCAATGAGCTAGTTGTCATTCATGGCCATGAAGAGCCCAAGCCATTGAAAAACTTGGATGGCCAAGTTTGTGAGATTTGTGGCGATGGTGTGGGACTCACGGTGGATGGAGACTTGTTTGTGGCATGCAATGAGTGTGGTTTTCCGGTCTGCCGGCCATGCTATGAGTATGAAAGGAGAGAAGGGGGTCAGCTTTGCCCACAATGCAAGACCAGATACAAGCGTCTCAAAGGGAGCCCGCGAGTGGAGGGAGATGACGATGAGGAGGACACGGATGATATTGAGCATGAATTCAATATTGATGATGAAAAGAACAAGCATGGTCATGCTGCAGAAGCGATGCTTCATGGGAAGATGAGCTATGGAAGAGGTCTTGAAGATGATGAGAATTCCCAGTTCCCAACTCCTGTTATTGCTGGTGGTCGTTCTAGGCCTGTAAGTGGGGAGTTCCCCTTATCTTCTCATGCTTATGGGGACCAAATGCTATCTTCTTCATTGCATAAAAGAGTGCATCCATATCCAATGTCTGAACCTGGTAAAGTGGATGGTTGGAAAGACAGAATGGAAGACTGGAAATTGCAGCAAGGAAATTTAGGGCCTGAACCTGATGAAGATCCAGATGCTGGCATGTTGGATGAAGCAAGGCAACCGTTATCAAGGAAAGTACCAATAGCATCAAGTAAAATCAATCCATATAGGATGGTGATTGTGGCACGCCTTGTCATTCTTGCTTTCTTCCTCAGATATAGAATTTTGAACCCTGTACATGATGCACTGGGCCTATGGCTAACCTCTATCGTATGTGAAATCTGGTTTGCTTTTTCATGGATTCTGGATCAGTTTCCCAAATGGTTTCCTATTGATAGAGAGACCTACCTCGACCGTCTTTCCATCAGGTATGAGCGTGAAGGTGAACCCAACATGCTTGCTCCTGTAGATGTCTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCTTTGGTTACAGCAAATACTGTTCTTTCAATCTTGGCCATGGATTACCCAGTTGATAAGATATCGTGCTACATTTCTGATGATGGAGCTTCAATGTGTACATTTGAGTCCCTGTCAGAAACTGCAGAGTTTGCAAGGAAGTGGGTACCCTTTTGTAAGAAATTTTGCATAGAACCCCGTGCACCTGAGATGTACTTTAGTGAGAAGATTGACTATTTAAAGGACAAAGTGCAACCCACCTTTGTCAAGGAGCGTCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTTGTTGCAAAAGCCCAAAAAGTTCCTCAAGGAGGGTGGATCATGCAAGATGGGACACCATGGCCAGGGAACAACACTAAGGATCATCCTGGTATGATTCAAGTCTTTCTTGGAAGCAGTGGAGGTTTTGATACTGAAGGAAACCAGCTTCCACGCCTTGTTTATGTCTCTAGAGAGAAAAGACCTGGTTTTCAACATCACAAGAAAGCTGGTGCCATGAATGCTTTGGTTCGGGTATCTGCTGTTCTCACAAATGCTCCTTTCATGTTGAACTTGGATTGTGATCACTATGTTAACAACAGCAAGGCTGCGAGAGAGGCCATGTGCTTCTTGATGGACCCCCAAACTGGGAAGAAGGTTTGCTATGTCCAGTTTCCACAAAGATTTGATGGCATTGATACTCATGATCGTTATGCCAATAGGAACACAGTTTTCTTCGACATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCTGTATATGTGGGCACAGGATGTGTTTTTAGGAGGCAAGCTTTATATGGCTATAATCCTCCAAAAGGTCCAAAGCGTCCAAAAATGGTAAGCTGTGATTGTTGCCCATGTTTTGGAAGCCGCAAGAAGTATAAGCAGAAGAGTGATGCAAATGGAGAGGCTGCCAGCCTAAAAGGGATGGATGGTGACAAAGAGGTGCTAATGTCTCAGATGAATTTTGAGAAGAAATTTGGACAGTCCTCTATTTTTGTGACTTCTACCTTAATGGAAGAGGGTGGTGTACCTCCTTCCTCAAGTCCAGCTGCACTACTTAAAGAAGCCATCCATGTAATTAGTTGTGGTTATGAAGACAAAACTGAATGGGGACTTGAGCTTGGTTGGATCTATGGATCCATCACAGAGGATATTCTAACAGGTTTTAAGATGCATTGCCGAGGGTGGAGGTCTATTTACTGTATGCCAAAGAGACCTGCATTCAAGGGTACTGCTCCTATCAACTTGTCAGATAGACTCAACCAAGTGCTTCGTTGGGCCCTTGGTTCCATTGAGATCTTCTTCAGTCACCATTGTCCTTTATGGTATGGCTTCAAGGAAAAGAAGCTAAAATGGCTTGAAAGATTTGCCTATGCAAACACAACTGTCTACCCTTTCACCTCTATTCCTCTAGTTGCCTATTGTATTCTTCCTGCAGTTTGCTTACTCACTGACAAATTCATCATGCCACCGATTAGCACTTTTGCTGGTTTGTACTTTGTTGCACTTTTCTCTTCAATCATTGCAACTGGTATTCTTGAGTTGAAATGGAGTGGAGTTAGCATTGAAGAATGGTGGAGAAATGAACAGTTCTGGGTCATTGGTGGTGTATCAGCTCACCTCTTTGCTGTTATACAAGGTCTACTAAAGGTTCTTGCAGGAATTGACACCAACTTCACTGTCACATCTAAAGCTGCAGATGATGAAGACTTTGGAGAATTATACACATTTAAGTGGACTACTCTCCTAATTCCTCCAACCACTATCCTAATTATAAACATTGTTGGTGTTGTTGCTGGAATCTCAGATGCTATAAACAATGGGTACCAATCATGGGGACCACTTTTTGGGAAGCTTTTCTTCTCTTTCTGGGTGATTGTCCATTTGTATCCATTCCTCAAAGGTTTGATGGGTCGGCAAAACCGCACACCCACCATTGTTGTGATTTGGTCAGTGCTATTGGCTTCTATTTTCTCCTTGCTGTGGGTAAGAATTGATCCTTTTGTCCTCAAGACTAAAGGACCTGATACCAAGCTATGTGGAATCAACTGTTAG 3099 0.4369 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECGFPVCRPCYEYERREGGQLCPQCKTRYKRLKGSPRVEGDDDEEDTDDIEHEFNIDDEKNKHGHAAEAMLHGKMSYGRGLEDDENSQFPTPVIAGGRSRPVSGEFPLSSHAYGDQMLSSSLHKRVHPYPMSEPGKVDGWKDRMEDWKLQQGNLGPEPDEDPDAGMLDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSIVCEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCTFESLSETAEFARKWVPFCKKFCIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGSSGGFDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGSRKKYKQKSDANGEAASLKGMDGDKEVLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGFKEKKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEDFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2605 1032 Coils Coil 423 443 - -
Apr1g2605 1032 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1032 - -
Apr1g2605 1032 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1032 - -
Apr1g2605 1032 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 482 616 IPR029044 -
Apr1g2605 1032 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Apr1g2605 1032 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
Apr1g2605 1032 Pfam Cellulose synthase 325 1026 IPR005150 GO:0016020|GO:0016760|GO:0030244
Apr1g2605 1032 SUPERFAMILY RING/U-box 21 107 - -
Apr1g2605 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Apr1g2605 1032 SUPERFAMILY Nucleotide-diphospho-sugar transferases 338 843 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2605 Apr-Chr1 35466267 35471959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2605 1 1032 Cell Wall Biosynthesis AT5G17420 86.847 0.0 1859
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2605 K10999 - gmx:100815436 2071.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2605 1 35466267 35471959 Apr1g2605 1 35466267 35471959 ECH