Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2603 ATGCAGCAAGGTGATAGAACGGTCCTAAGTTTGAGGCCTGGTGGTGGTCGTGGCGGCGGAAGCAGGCTTTTCGCTCACTCCTCTTCTCCCTCTCCCTCCGCCGATCTTCCTATCTCACGCCCCCATGCCTCTCTCTCTCTCAAGACGGGAGACTCGTGGTTTGAGGGTCGTGAGCGTCTGCGATATACCAGAGACCAGCTTTTAAAGCTTAGAGAGGCTGTTGAGGTCCCTGATGATATTCTAAAGATTAAACAAGAAATAGAAGCTGAGCTTTTGGGTGAAGATCAAAGTTGGGGCCGTGCTGAAAGCAATCTCCCTCATCAACTAAATCGATATTCTGAGCCAGATAACCGTGATTGGCGTGGTCGATCTGGACAACTTCCTGCTAATCCAGATGAGAGGTCTTGGGAAAACCTCAGAGATAACAGGGAGTTTGGTAATAGATTTGACAATCGACAACAGGATGCTGGTCAGTTTAATCACCAAGACCAACTTAATTCCCAGTTTGCGAGGACACAAATCTCTTCTACACAAGGGGGAGGACCTACTACACTACTCAAGGCTGAGGTTCCATGGTCAGCGAGAAGGGGAACTCTCTCTGAAAAGGATCGTGTCTTGAAGACTGTGAAAGGGATATTGAATAAGTTGACTCCAGAGAAATTTGATGTCCTGAAGGGTCAGTTAATTGATTCTGGCATTACATCAGCTGACATCTTGAAGGATGTCATTTCACTTATATTTGATAAGGCTGTTCTAGAACCAACATTTTGCCCCATGTATGCTCAGCTGTGTTCTGATCTTAATGAAAAGCTCCCTCCATTTCCATCTGAAGAACCTGGTGGGAAAGAAATCACTTTTAAGAGAGTACTCTTGAACAATTGTCAGGAGGCTTTTGAAGGTTCAGATAATCTGAGAGAGGAAGTAAAACAGATGACTGCCCCTGAGCAGGAGATGGAGCGTATGGACAAGGAAAGGCTGATCAAGCTTCGTACCCTTGGAAATATCCGTTTAATTGGTGAGCTATTGAAGCAGAAGATGGTTCCTGAAAAGATTGTCCATCACATTGTTCAGGAGCTTTTAGGATCCCCAGACAGCAAGTCTTGTCCAGTTGAGGAAAATGTTGAAGCCATATGTCAGTTTTTCAATACTATCGGCAAGCAACTTGATGAAAGTCCTAAATCACGGCGTATTAATGATATGTACTTCAGCCGGTTGAAAGAACTAAGCACAAACCCACAACTTGTACCACGGCTTAGGTTCATGATTCGGGATGTTATAGATTTACGTGCTAATAACTGGGTTCCTAGACGCGAAGAGGTTAAAGCCAAAACAATCACTGAAATTCATTCAGAGGCAGAGAAAACTCTTGGTTTGCGTCCTGGTGCCACAGCTAGTATTAGAAATACCCGTAGCAGTATTCAAGGAAATGCTGGCTCTGGGGCCTTTCCCATTGCTCGACCTGGCACAGGAGGTTTGATGCCTGGAATGCCAGGGACCAGGAAGATGCCTGGGATGCCTGGAATTGATAATGACAACTGGGAGATACCTAGGACTAGGTCTGTGCCAAGAGGAGACTTGTCAGCTGTTCAAGCTGGTGGACGCAGCAACTCTTTTGTTTCAAAGTCCACAACCCTTAATTCTAAACTGCTACCCCAAGGTAGTGGTGGTATTATAAGTGGAAGAAATAGTGCCCTAGTTCATGGAGGTGGTGCGTTTTCTGCTCGCCCATTGAACTTTGGTTTAGGTGCTGAGGCAGCATCTCAACTCTCATCACCTGCTAAAACAGTTTCTTCTGTATCCTCTGAGAAGCCACTTACTCCAGCTGCAAGATTGAATACTGAAGATCTTCACCGCAGAACTGTCTCTCTTCTGGAAGAATATTTCAGTGTTCGGCTTTTGGAAGAGGCATTACAGTGCGTGGAGGAATTAAAATCTCCTTCTTACCACCCTGAGGTTGTTAAGGAAGCCATTTCCCTTGCACTTGATAAAAGTCCACCATGCGTTGAACCCGTTGCCAATCTTATTGAGTATCTGTTTATTAAGAAGATTCTTACAACTAGAGATATAGGGACTGGCTGTTTGTTATTTGCTTCTCAACTGGATGATATTGGCATAGATTTGCCTAAAGCACCGAGTAATTATGGCGAGATAATTGGGAAACTGATTTTGGCTGGGGGGTTGGATTTTAAGGTGGTGGGAGAGATTCTCAAGAAGTTGGAAGATGACCTGTTCCAAAGGGCAATATTTGACCGTGCACTACAGGTCATTATATCTGCATCTGGACAAGCTGTGTTGGATTCACAATCATCTGATATTGAGGCCTGCCAGAGTTTTCTCAAGTGA 2343 0.4486 MQQGDRTVLSLRPGGGRGGGSRLFAHSSSPSPSADLPISRPHASLSLKTGDSWFEGRERLRYTRDQLLKLREAVEVPDDILKIKQEIEAELLGEDQSWGRAESNLPHQLNRYSEPDNRDWRGRSGQLPANPDERSWENLRDNREFGNRFDNRQQDAGQFNHQDQLNSQFARTQISSTQGGGPTTLLKAEVPWSARRGTLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSEEPGGKEITFKRVLLNNCQEAFEGSDNLREEVKQMTAPEQEMERMDKERLIKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSPDSKSCPVEENVEAICQFFNTIGKQLDESPKSRRINDMYFSRLKELSTNPQLVPRLRFMIRDVIDLRANNWVPRREEVKAKTITEIHSEAEKTLGLRPGATASIRNTRSSIQGNAGSGAFPIARPGTGGLMPGMPGTRKMPGMPGIDNDNWEIPRTRSVPRGDLSAVQAGGRSNSFVSKSTTLNSKLLPQGSGGIISGRNSALVHGGGAFSARPLNFGLGAEAASQLSSPAKTVSSVSSEKPLTPAARLNTEDLHRRTVSLLEEYFSVRLLEEALQCVEELKSPSYHPEVVKEAISLALDKSPPCVEPVANLIEYLFIKKILTTRDIGTGCLLFASQLDDIGIDLPKAPSNYGEIIGKLILAGGLDFKVVGEILKKLEDDLFQRAIFDRALQVIISASGQAVLDSQSSDIEACQSFLK* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2603 780 SUPERFAMILY ARM repeat 199 435 IPR016024 -
Apr1g2603 780 MobiDBLite consensus disorder prediction 1 42 - -
Apr1g2603 780 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 779 - -
Apr1g2603 780 MobiDBLite consensus disorder prediction 103 134 - -
Apr1g2603 780 SMART ma3_7 616 728 IPR003891 -
Apr1g2603 780 ProSiteProfiles MI domain profile. 615 737 IPR003891 -
Apr1g2603 780 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 779 IPR045208 GO:0003743
Apr1g2603 780 Pfam MA3 domain 618 728 IPR003891 -
Apr1g2603 780 SUPERFAMILY ARM repeat 610 767 IPR016024 -
Apr1g2603 780 Gene3D - 609 779 - -
Apr1g2603 780 SMART if4_15 206 432 IPR003890 GO:0003723|GO:0005515
Apr1g2603 780 Pfam MIF4G domain 206 432 IPR003890 GO:0003723|GO:0005515
Apr1g2603 780 Gene3D - 197 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2603 Apr-Chr1 35448731 35454797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2603 1 778 Eukaryotic Initiation Factors Gene Family AT5G57870 62.879 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2603 K03260 - gmx:100816500 1283.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2603 1 35448731 35454797 Apr1g2603 1 35448731 35454797 ECH