Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2600 ATGATCATAGATATAAAGGGTGCAATGATGGCATCTCAAACCAAGACCCTTCATCTCTTCTTCTTCTTCATGTGCTTATTATTAAGCTTTTCAAATATTTCATGCATTGTTGCTGTGCCAAAAGAGCAAGAGCAAGATCGAATCTTTGCTCTCCCGGGGCAGCCACCAGTGACATTTTCTCAGTTCTCTGGTTATGTCACGGTCAATGAGCAACATGGTCGAGCACTCTTTTACTGGTTCACTGAGGCCACCACTTCCCCAGAGAATAAACCTCTTGTTCTCTGGCTCAATGGAGGGCCTGGTTGTTCATCTGTGGCATACGGGGCATCAGAGGAAATTGGACCATTCCGTATAAACAAAAGTGGCTCTTCTCTATACCTCAACAAATATGCATGGAATAGAGAAGCAAATATCTTATTTGTTGAATCGCCTGCTGGTGTTGGTTTCTCATACACAAATACAAGTTCTGATCTGAACACTTCTGGAGACAAAAGGACAGCTCAGGATGCTCTTATTTTTCTAATAAGATGGATGGAGAGATTTCCACAGTATAAATATAGAGAGTTTTACATGGCAGGGGAGAGCTATGCAGGGCATTATGTCCCCCAGTTGGCTAAGAAAGTCCATGATTATAATAAAAATAATCCTCACATCCTTAATCTTAAAGGGTTCATTGTGGGGAATGCTGTGACTGATGACCACTATGATGGGGTTGGAACTGTCACATATTGGTGGAGCCACTCTATGATATCTGATCAATCATACAAATCTATCCTCAAATATTGCAATTTTTCTGAAAAGAAAACAACTAAAAAATGTGATGATGCAGTGAATTATGCGGTTAATAATGAATTTGGAAACATTGATCAGTACAGTATCTATACCCCTTCGTGCACAACATCACACAACGATACTTTGAGGCATGTTAGGTTCAAGAGTACAATTTTACATAGGATTTCTGGGTATGATCCGTGTACTGAAGATTATGCAGAGAAATACTACAATCGTCTTGATGTGCAGAAAGCAATGCATGCAAATGTTACGAACATTCCTTACAAATGGACTGCTTGCAGTGACGCGCTCAATAAAAATTGGAAGGATTCTGAGTTTTCTATGTTGCCCATTTACAAAGAGTTAATTGCAGCTGGTTTGAGAATCTGGGTTTTCAGTGGAGACACGGATTCAGTGGTTCCAGTAACTGCCACAAGGTTTTCTCTTAGCCATCTCAACCTCACCATCAAAACTCGTTGGTATCCATGGTACACGGGTGGCCAGGTAGGTGGATGGACAGAGGTGTATGATGGACTAACTTTTACAACAGTAAGAGGAGCTGGGCATGAGGTACCATTGCTTCAGCCAGAGCGAGCTTACATACTTTTCAGGTCCTTTTTGGCAGGGAAACACCTACCAAAATCTTGA 1419 0.4123 MIIDIKGAMMASQTKTLHLFFFFMCLLLSFSNISCIVAVPKEQEQDRIFALPGQPPVTFSQFSGYVTVNEQHGRALFYWFTEATTSPENKPLVLWLNGGPGCSSVAYGASEEIGPFRINKSGSSLYLNKYAWNREANILFVESPAGVGFSYTNTSSDLNTSGDKRTAQDALIFLIRWMERFPQYKYREFYMAGESYAGHYVPQLAKKVHDYNKNNPHILNLKGFIVGNAVTDDHYDGVGTVTYWWSHSMISDQSYKSILKYCNFSEKKTTKKCDDAVNYAVNNEFGNIDQYSIYTPSCTTSHNDTLRHVRFKSTILHRISGYDPCTEDYAEKYYNRLDVQKAMHANVTNIPYKWTACSDALNKNWKDSEFSMLPIYKELIAAGLRIWVFSGDTDSVVPVTATRFSLSHLNLTIKTRWYPWYTGGQVGGWTEVYDGLTFTTVRGAGHEVPLLQPERAYILFRSFLAGKHLPKS* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2600 472 Pfam Serine carboxypeptidase 53 465 IPR001563 GO:0004185|GO:0006508
Apr1g2600 472 PANTHER SERINE CARBOXYPEPTIDASE 24 25 471 - -
Apr1g2600 472 ProSitePatterns Serine carboxypeptidases, serine active site. 191 198 IPR018202 GO:0004185
Apr1g2600 472 Gene3D - 325 362 - -
Apr1g2600 472 Gene3D alpha/beta hydrolase 42 300 IPR029058 -
Apr1g2600 472 Gene3D - 372 466 - -
Apr1g2600 472 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 25 471 IPR001563 GO:0004185|GO:0006508
Apr1g2600 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 140 IPR001563 GO:0004185|GO:0006508
Apr1g2600 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 141 151 IPR001563 GO:0004185|GO:0006508
Apr1g2600 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 177 202 IPR001563 GO:0004185|GO:0006508
Apr1g2600 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 436 449 IPR001563 GO:0004185|GO:0006508
Apr1g2600 472 ProSitePatterns Serine carboxypeptidases, histidine active site. 436 453 IPR033124 GO:0004185
Apr1g2600 472 SUPERFAMILY alpha/beta-Hydrolases 43 470 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2600 Apr-Chr1 35424551 35431586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2600 330 469 Calmodulin-binding Proteins AT2G22960 29.787 9.26e-14 67.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2600 1 35424551 35431586 Apr1g2600 1 35424551 35431586 ECH