Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr1g2588 | ATGGGTTTGGGAGTGTTTGGTTCTGTTCTAGTTTTGACACTCTTGTTCAAGCACTTAGCATCCCAGCAACCGAACACTGATGATTCCTTTGTGTCTGAGTTCTTGAAGAAGATGGGTTTAGCATCCTCCCAGGTCTACAACTTGTCTTCTTCTGTATGTTCGTGGCAAGGGGTTTCATGTGATTCCAAGGGAGAGCATGTTGTTGAGTTGGGTTTTTCTGGTATGGGTCTTTCTGGTCCTATTCCAGAAACCACAATAGGCAAGCTCAGCAAGCTTCAATCTTTGGACCTCAGCAACAACAAGATCACTGACTTGCCTTCTGATTTCTGGAGCTTAAGCTTTCTCAAGAGCCTCAACCTCTCCTTCAATCAGATTCATGGCTTATTGACTAACAACATTGGAAACTTTGGTTTGCTTGAAGTATTAGACTTGTCCAGCAACAATTTCTATGGGGTAATTCCTGAAGCTGTTAGTTCTCTTGAGAGTGCGAGGGTCCTCAAACTTGACCACAACAGGTTTGACCAAAGCATGCCTTCCGGGATTCTCAAGTGTCACTCTCTAGTTTCAATTGATCTTTCTTCAAACCAGCTTAGTGGGACACTTCCACATGGTTTTGCTGCTGCTTTTCCTAAGCTCATTAGCTTGAACCTTGCTGGGAATAATATTTATGGTAATGATTCAGATATTTCAGGGTTGAAGTCCATTGTGAGTCTCAACATATCTGGCAATTCCTTTCAGGGTTCTGTGATGGGTTTGTTTAAGGGAAGGCTTGAGGTCTTGGACCTTAGCAGAAACCAAATGCAAGGTCACATTGCTCAGGTACCTTTTGTCTCTAAGTACAATTGGTCTGGTTTAGTTTACCTTGATTTGTCAGAGAATCAGCTTGATGGGGACATTTTCCAAAATTTTAATGAATCCCATAATCTAAAGCACCTTAATATTGCTTACAATAGATTTACCAGACAGAAATTCCCCAAGATTGAAATGTTCTCAGGATTGGAATATCTGAATTTGTCCAAAACTAGTCTCATTGGTTACATTCCTGCTGAAATCTCACAACTGAGTAATTTGAATACACTTGATGTTTCTATGAATCATCTTATAGGGAAAATCCCTTTACTAAGCAATAAGAACCTCCAAGTTCTTGACCTTTCAAATAACAATTTGAGTGGAGTAGTCCCTCCATCAGTCTTAGAGAAACTTCCTTTGATGGAGAAATACAACTTCTCTTATAATAACTTAACCCTTTGTGCTTCGGAAATCAAACCAGCTATCCTCCAAACAGCATTCTTTGGATTACTGAATAGTTGCCCAATTGCTGCAAACCCAAGCCTTTTCAAAAAAAGAGAGGCACAGCACAAGGGAATGAAGCTAGCTCTGGCATTGACCCTCTCAATGATCGGCTTGATTGCTGGCCTTTTGCTTCTATCGTTCAGTCGCCTTAAGAAAACAAAACCATGGGCTGTTAAGCAAACTTCATACAAAGAAGAACACATGTCAGGTCCCTTTTCATTCCACACCGATTTGACCACGTGGGTGGCTGATGTTAAACAAGCATCATCTGTTCCGGTCGTGATCTTTGACAAACCATTGTTGAATATTACATTTGCAGATCTCTTGGCTGCAACTTCAAATTTCGATAGGGGTACCCTTTTGGCTGAAGGAAAATTTGGGCCTGTATATAGAGGCTTTCTAGCTGGTGGTATTCATGTAGCAGTTAAAGTTCTAGTGGTTGGATCTACTCTTACAGATAAAGAAGCTGCACGAGAGCTTGAGTATCTTGGTAGAATCAAGCATCCCAATCTTGTTCCTCTAACTGGATATTGTGTAGCTGGTGATCAGAGAATTGCCATATATGACTACATGGAGAATGGAAACTTGCAAAATTTGCTTTATGACTTGCCACTTGGAGTACTACAAAGGACAGATGATTGGAGCACAGATACATGGGAAGAAGATGATAGTAATGGAATTCAAAATGCTGGATCTGAAGGAGTCCTCACAACATGGAGATTCCGCCATAAAATTGCACTTGGCACTGCCCGGGCATTGGCATTTCTGCATCATGGATGCTCACCACCAATTATCCACAGAGATGTTAAAGCTAGCAGTGTTTATTTGGACTATAACTTGGAGCCAAGATTGTCTGATTTTGGGCTGGCTAGGATTTTTGGTGGTGGCTTGGATGAGGAGATTGCACTTAGTTCACCTGGTTATGTTCCACCAGAGTTTTCTCAACCAGAATTTGACACCTCATCTCCAAAATCTGACGTGTACTGTTTTGGAGTTGTTCTCTTTGAGCTACTAACTGGGAAGAAACCAGTTGGAGATGATTATCATGATGAGAAAGAAGCAACTTTGGTTAGTTGGGTCAGAGGACTTGTAAGAAACAACAAAGCTTCAAGAGCTATTGATCCTAAAATTCGCGATACAGGATCAGAAGGGCAAATGGAGGAGGCCCTTAAGATTGGTCATCTGTGCACTGCTGAACTTCCTTCCAAGCGACCAAGCATGCAGCAGATAGTTGGACTTCTGAAAGATATTGAACCTTCTCCTAATTAG | 2562 | 0.4141 | MGLGVFGSVLVLTLLFKHLASQQPNTDDSFVSEFLKKMGLASSQVYNLSSSVCSWQGVSCDSKGEHVVELGFSGMGLSGPIPETTIGKLSKLQSLDLSNNKITDLPSDFWSLSFLKSLNLSFNQIHGLLTNNIGNFGLLEVLDLSSNNFYGVIPEAVSSLESARVLKLDHNRFDQSMPSGILKCHSLVSIDLSSNQLSGTLPHGFAAAFPKLISLNLAGNNIYGNDSDISGLKSIVSLNISGNSFQGSVMGLFKGRLEVLDLSRNQMQGHIAQVPFVSKYNWSGLVYLDLSENQLDGDIFQNFNESHNLKHLNIAYNRFTRQKFPKIEMFSGLEYLNLSKTSLIGYIPAEISQLSNLNTLDVSMNHLIGKIPLLSNKNLQVLDLSNNNLSGVVPPSVLEKLPLMEKYNFSYNNLTLCASEIKPAILQTAFFGLLNSCPIAANPSLFKKREAQHKGMKLALALTLSMIGLIAGLLLLSFSRLKKTKPWAVKQTSYKEEHMSGPFSFHTDLTTWVADVKQASSVPVVIFDKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLAGGIHVAVKVLVVGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVLQRTDDWSTDTWEEDDSNGIQNAGSEGVLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLARIFGGGLDEEIALSSPGYVPPEFSQPEFDTSSPKSDVYCFGVVLFELLTGKKPVGDDYHDEKEATLVSWVRGLVRNNKASRAIDPKIRDTGSEGQMEEALKIGHLCTAELPSKRPSMQQIVGLLKDIEPSPN* | 854 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr1g2588 | 853 | PRINTS | Leucine-rich repeat signature | 92 | 105 | - | - | |
Apr1g2588 | 853 | PRINTS | Leucine-rich repeat signature | 354 | 367 | - | - | |
Apr1g2588 | 853 | ProSiteProfiles | Protein kinase domain profile. | 546 | 853 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Apr1g2588 | 853 | PANTHER | CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 850 | - | - | |
Apr1g2588 | 853 | Gene3D | Transferase(Phosphotransferase) domain 1 | 622 | 852 | - | - | |
Apr1g2588 | 853 | Pfam | Leucine Rich Repeat | 378 | 397 | IPR001611 | GO:0005515 | |
Apr1g2588 | 853 | Gene3D | Ribonuclease Inhibitor | 28 | 178 | IPR032675 | - | |
Apr1g2588 | 853 | SUPERFAMILY | L domain-like | 41 | 418 | - | - | |
Apr1g2588 | 853 | ProSiteProfiles | Leucine-rich repeat profile. | 378 | 399 | IPR001611 | GO:0005515 | |
Apr1g2588 | 853 | SUPERFAMILY | Protein kinase-like (PK-like) | 523 | 845 | IPR011009 | - | |
Apr1g2588 | 853 | Pfam | Leucine rich repeat | 81 | 125 | IPR001611 | GO:0005515 | |
Apr1g2588 | 853 | Pfam | Leucine rich repeat | 139 | 197 | IPR001611 | GO:0005515 | |
Apr1g2588 | 853 | Gene3D | Ribonuclease Inhibitor | 277 | 428 | IPR032675 | - | |
Apr1g2588 | 853 | Gene3D | Ribonuclease Inhibitor | 179 | 276 | IPR032675 | - | |
Apr1g2588 | 853 | Pfam | Protein tyrosine and serine/threonine kinase | 550 | 843 | IPR001245 | GO:0004672|GO:0006468 | |
Apr1g2588 | 853 | Gene3D | Phosphorylase Kinase; domain 1 | 507 | 621 | - | - | |
Apr1g2588 | 853 | ProSiteProfiles | Leucine-rich repeat profile. | 91 | 112 | IPR001611 | GO:0005515 | |
Apr1g2588 | 853 | SMART | LRR_typ_2 | 89 | 111 | IPR003591 | - | |
Apr1g2588 | 853 | SMART | LRR_typ_2 | 112 | 135 | IPR003591 | - | |
Apr1g2588 | 853 | SMART | LRR_typ_2 | 377 | 400 | IPR003591 | - | |
Apr1g2588 | 853 | SMART | LRR_typ_2 | 160 | 184 | IPR003591 | - | |
Apr1g2588 | 853 | SMART | LRR_typ_2 | 136 | 159 | IPR003591 | - | |
Apr1g2588 | 853 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED | 1 | 850 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr1g2588 | Apr-Chr1 | 35343124 | 35346244 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr1g2588 | 63 | 848 | Receptor kinase-like Gene Family | AT5G07280 | 31.618 | 2.36e-108 | 358 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-VII-2 | Apr1g2588 | PK_Tyr_Ser-Thr | 3.3e-32 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr1g2588 | - | - | gmx:100807051 | 1448.34 |