Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2588 ATGGGTTTGGGAGTGTTTGGTTCTGTTCTAGTTTTGACACTCTTGTTCAAGCACTTAGCATCCCAGCAACCGAACACTGATGATTCCTTTGTGTCTGAGTTCTTGAAGAAGATGGGTTTAGCATCCTCCCAGGTCTACAACTTGTCTTCTTCTGTATGTTCGTGGCAAGGGGTTTCATGTGATTCCAAGGGAGAGCATGTTGTTGAGTTGGGTTTTTCTGGTATGGGTCTTTCTGGTCCTATTCCAGAAACCACAATAGGCAAGCTCAGCAAGCTTCAATCTTTGGACCTCAGCAACAACAAGATCACTGACTTGCCTTCTGATTTCTGGAGCTTAAGCTTTCTCAAGAGCCTCAACCTCTCCTTCAATCAGATTCATGGCTTATTGACTAACAACATTGGAAACTTTGGTTTGCTTGAAGTATTAGACTTGTCCAGCAACAATTTCTATGGGGTAATTCCTGAAGCTGTTAGTTCTCTTGAGAGTGCGAGGGTCCTCAAACTTGACCACAACAGGTTTGACCAAAGCATGCCTTCCGGGATTCTCAAGTGTCACTCTCTAGTTTCAATTGATCTTTCTTCAAACCAGCTTAGTGGGACACTTCCACATGGTTTTGCTGCTGCTTTTCCTAAGCTCATTAGCTTGAACCTTGCTGGGAATAATATTTATGGTAATGATTCAGATATTTCAGGGTTGAAGTCCATTGTGAGTCTCAACATATCTGGCAATTCCTTTCAGGGTTCTGTGATGGGTTTGTTTAAGGGAAGGCTTGAGGTCTTGGACCTTAGCAGAAACCAAATGCAAGGTCACATTGCTCAGGTACCTTTTGTCTCTAAGTACAATTGGTCTGGTTTAGTTTACCTTGATTTGTCAGAGAATCAGCTTGATGGGGACATTTTCCAAAATTTTAATGAATCCCATAATCTAAAGCACCTTAATATTGCTTACAATAGATTTACCAGACAGAAATTCCCCAAGATTGAAATGTTCTCAGGATTGGAATATCTGAATTTGTCCAAAACTAGTCTCATTGGTTACATTCCTGCTGAAATCTCACAACTGAGTAATTTGAATACACTTGATGTTTCTATGAATCATCTTATAGGGAAAATCCCTTTACTAAGCAATAAGAACCTCCAAGTTCTTGACCTTTCAAATAACAATTTGAGTGGAGTAGTCCCTCCATCAGTCTTAGAGAAACTTCCTTTGATGGAGAAATACAACTTCTCTTATAATAACTTAACCCTTTGTGCTTCGGAAATCAAACCAGCTATCCTCCAAACAGCATTCTTTGGATTACTGAATAGTTGCCCAATTGCTGCAAACCCAAGCCTTTTCAAAAAAAGAGAGGCACAGCACAAGGGAATGAAGCTAGCTCTGGCATTGACCCTCTCAATGATCGGCTTGATTGCTGGCCTTTTGCTTCTATCGTTCAGTCGCCTTAAGAAAACAAAACCATGGGCTGTTAAGCAAACTTCATACAAAGAAGAACACATGTCAGGTCCCTTTTCATTCCACACCGATTTGACCACGTGGGTGGCTGATGTTAAACAAGCATCATCTGTTCCGGTCGTGATCTTTGACAAACCATTGTTGAATATTACATTTGCAGATCTCTTGGCTGCAACTTCAAATTTCGATAGGGGTACCCTTTTGGCTGAAGGAAAATTTGGGCCTGTATATAGAGGCTTTCTAGCTGGTGGTATTCATGTAGCAGTTAAAGTTCTAGTGGTTGGATCTACTCTTACAGATAAAGAAGCTGCACGAGAGCTTGAGTATCTTGGTAGAATCAAGCATCCCAATCTTGTTCCTCTAACTGGATATTGTGTAGCTGGTGATCAGAGAATTGCCATATATGACTACATGGAGAATGGAAACTTGCAAAATTTGCTTTATGACTTGCCACTTGGAGTACTACAAAGGACAGATGATTGGAGCACAGATACATGGGAAGAAGATGATAGTAATGGAATTCAAAATGCTGGATCTGAAGGAGTCCTCACAACATGGAGATTCCGCCATAAAATTGCACTTGGCACTGCCCGGGCATTGGCATTTCTGCATCATGGATGCTCACCACCAATTATCCACAGAGATGTTAAAGCTAGCAGTGTTTATTTGGACTATAACTTGGAGCCAAGATTGTCTGATTTTGGGCTGGCTAGGATTTTTGGTGGTGGCTTGGATGAGGAGATTGCACTTAGTTCACCTGGTTATGTTCCACCAGAGTTTTCTCAACCAGAATTTGACACCTCATCTCCAAAATCTGACGTGTACTGTTTTGGAGTTGTTCTCTTTGAGCTACTAACTGGGAAGAAACCAGTTGGAGATGATTATCATGATGAGAAAGAAGCAACTTTGGTTAGTTGGGTCAGAGGACTTGTAAGAAACAACAAAGCTTCAAGAGCTATTGATCCTAAAATTCGCGATACAGGATCAGAAGGGCAAATGGAGGAGGCCCTTAAGATTGGTCATCTGTGCACTGCTGAACTTCCTTCCAAGCGACCAAGCATGCAGCAGATAGTTGGACTTCTGAAAGATATTGAACCTTCTCCTAATTAG 2562 0.4141 MGLGVFGSVLVLTLLFKHLASQQPNTDDSFVSEFLKKMGLASSQVYNLSSSVCSWQGVSCDSKGEHVVELGFSGMGLSGPIPETTIGKLSKLQSLDLSNNKITDLPSDFWSLSFLKSLNLSFNQIHGLLTNNIGNFGLLEVLDLSSNNFYGVIPEAVSSLESARVLKLDHNRFDQSMPSGILKCHSLVSIDLSSNQLSGTLPHGFAAAFPKLISLNLAGNNIYGNDSDISGLKSIVSLNISGNSFQGSVMGLFKGRLEVLDLSRNQMQGHIAQVPFVSKYNWSGLVYLDLSENQLDGDIFQNFNESHNLKHLNIAYNRFTRQKFPKIEMFSGLEYLNLSKTSLIGYIPAEISQLSNLNTLDVSMNHLIGKIPLLSNKNLQVLDLSNNNLSGVVPPSVLEKLPLMEKYNFSYNNLTLCASEIKPAILQTAFFGLLNSCPIAANPSLFKKREAQHKGMKLALALTLSMIGLIAGLLLLSFSRLKKTKPWAVKQTSYKEEHMSGPFSFHTDLTTWVADVKQASSVPVVIFDKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLAGGIHVAVKVLVVGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVLQRTDDWSTDTWEEDDSNGIQNAGSEGVLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLARIFGGGLDEEIALSSPGYVPPEFSQPEFDTSSPKSDVYCFGVVLFELLTGKKPVGDDYHDEKEATLVSWVRGLVRNNKASRAIDPKIRDTGSEGQMEEALKIGHLCTAELPSKRPSMQQIVGLLKDIEPSPN* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2588 853 PRINTS Leucine-rich repeat signature 92 105 - -
Apr1g2588 853 PRINTS Leucine-rich repeat signature 354 367 - -
Apr1g2588 853 ProSiteProfiles Protein kinase domain profile. 546 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2588 853 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 1 850 - -
Apr1g2588 853 Gene3D Transferase(Phosphotransferase) domain 1 622 852 - -
Apr1g2588 853 Pfam Leucine Rich Repeat 378 397 IPR001611 GO:0005515
Apr1g2588 853 Gene3D Ribonuclease Inhibitor 28 178 IPR032675 -
Apr1g2588 853 SUPERFAMILY L domain-like 41 418 - -
Apr1g2588 853 ProSiteProfiles Leucine-rich repeat profile. 378 399 IPR001611 GO:0005515
Apr1g2588 853 SUPERFAMILY Protein kinase-like (PK-like) 523 845 IPR011009 -
Apr1g2588 853 Pfam Leucine rich repeat 81 125 IPR001611 GO:0005515
Apr1g2588 853 Pfam Leucine rich repeat 139 197 IPR001611 GO:0005515
Apr1g2588 853 Gene3D Ribonuclease Inhibitor 277 428 IPR032675 -
Apr1g2588 853 Gene3D Ribonuclease Inhibitor 179 276 IPR032675 -
Apr1g2588 853 Pfam Protein tyrosine and serine/threonine kinase 550 843 IPR001245 GO:0004672|GO:0006468
Apr1g2588 853 Gene3D Phosphorylase Kinase; domain 1 507 621 - -
Apr1g2588 853 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Apr1g2588 853 SMART LRR_typ_2 89 111 IPR003591 -
Apr1g2588 853 SMART LRR_typ_2 112 135 IPR003591 -
Apr1g2588 853 SMART LRR_typ_2 377 400 IPR003591 -
Apr1g2588 853 SMART LRR_typ_2 160 184 IPR003591 -
Apr1g2588 853 SMART LRR_typ_2 136 159 IPR003591 -
Apr1g2588 853 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 850 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2588 Apr-Chr1 35343124 35346244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2588 63 848 Receptor kinase-like Gene Family AT5G07280 31.618 2.36e-108 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Apr1g2588 PK_Tyr_Ser-Thr 3.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2588 - - gmx:100807051 1448.34