Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2583 ATGCAGCCTTGTAGCAGAGAAATGCAAGGAATCAACTCTCTCATAAACGCTTCCCAAATCTCTCTCCAAGACCTTCACAACGCAAATCAGATCCAAAACACACACATGAACCAACTCAATCACTTCGACCCAACTTCCCACGATGACTTCCTCGAGCAAATGCTATCTTCTTGCTCATGGCCTGAGCTCAACCCAAACAAGCCCCTGTGGGACCCTAACAACACCCTCCATGACATCAAACACCATGACCTCTCCGAGGAAACGACACCGTCCAGCGCTGAAAATGTCGCTTTTCCCTACGACGAACACAACACCTTGGCCTCCAAGTTCCGCAACCACCAGATCAGCCCCTCCGTGCCAACAACCAAGGCCGCGGCACTCATGCTTCAGCAACACCTCCTCATGCCCCAGATGCCACTTTCGCTGCCCCGAAACGACGTCGTTGACGCCTCCTCCTTCAAGCCTCCCACTCCCGGTGGCGAGGCTTCAGTTCAAGCTCTCTACAACAGTTTCGCCGGATCTCTCCATGCTACTACCGGTCAAGCCTCGAACCAGACTCAGCATTTTCAACATCCCCAAGGAACTTCGAACCCGATGCAGGGGCAGAATTTTGCAGGTGCAGGGGGTGCAACGAACCAAGCTCCGGCGAGTGGGGCCGCCGCTGGCGCCCCGGCTCAGCCGAGGCAGAGGGTTCGAGCCAGGAGAGGTCAGGCCACTGACCCACACAGCATCGCTGAAAGGTTACGAAGGGAGAGAATCGCAGAGAGAATGAAGGCTCTGCAGGAACTGGTTCCCAATGCCAACAAGACAGACAAGGCATCCATGTTGGATGAGATCATCGATTACGTGAAGTTTCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTGCTGTTGCTCCCCTTGTTGCTGATATGTCCTCTGAGGGAGGCGGTGACTGCATCCAAGCCAATGGCAACAGTAACGGCGGTGGGGTCCTGAACCGGAACTCCAACAACAACAACAACACCCAAACGACAGCGTCAACCTCAAACGACAGCCTGACCATGACGGAGCAGCAGGTAGCGAAACTGATGGAAGAGGATATGGGCTCAGCCATGCAGTACCTCCAAGGCAAGGGCCTCTGCCTCATGCCAATTTCCCTCGCCACTGCCATCTCCACTGCCACGTGTCACAGCAGGAACCCCTTGATGAACGGCAACAACCAGATTCCCAACAATAACGGCGGTGGCAACCACGCAAACCCCGCCGTCCCTTCTAACGGCGAAGGGCCGTCCTCTCCGAGCATGTCGGTGCTGACGGTGCAGTCGGCCGTAGTGGGTAACGAGGGCCCGGTGAAGGACGCTGCCTCCGTTTCGAAGCCGTGA 1383 0.5611 MQPCSREMQGINSLINASQISLQDLHNANQIQNTHMNQLNHFDPTSHDDFLEQMLSSCSWPELNPNKPLWDPNNTLHDIKHHDLSEETTPSSAENVAFPYDEHNTLASKFRNHQISPSVPTTKAAALMLQQHLLMPQMPLSLPRNDVVDASSFKPPTPGGEASVQALYNSFAGSLHATTGQASNQTQHFQHPQGTSNPMQGQNFAGAGGATNQAPASGAAAGAPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQANGNSNGGGVLNRNSNNNNNTQTTASTSNDSLTMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHSRNPLMNGNNQIPNNNGGGNHANPAVPSNGEGPSSPSMSVLTVQSAVVGNEGPVKDAASVSKP* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2583 460 MobiDBLite consensus disorder prediction 402 460 - -
Apr1g2583 460 MobiDBLite consensus disorder prediction 328 353 - -
Apr1g2583 460 MobiDBLite consensus disorder prediction 178 210 - -
Apr1g2583 460 PANTHER TRANSCRIPTION FACTOR BHLH69 38 407 - -
Apr1g2583 460 MobiDBLite consensus disorder prediction 178 245 - -
Apr1g2583 460 Gene3D - 232 294 IPR036638 GO:0046983
Apr1g2583 460 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 38 407 - -
Apr1g2583 460 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 235 297 IPR036638 GO:0046983
Apr1g2583 460 SMART finulus 243 292 IPR011598 GO:0046983
Apr1g2583 460 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 237 286 IPR011598 GO:0046983
Apr1g2583 460 MobiDBLite consensus disorder prediction 402 443 - -
Apr1g2583 460 Pfam Helix-loop-helix DNA-binding domain 242 287 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2583 Apr-Chr1 35280888 35284373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2583 216 442 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 66.079 3.00e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr1g2583 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2583 - - gmx:100807286 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2583 1 35280888 35284373 Apr1g2583 1 35280888 35284373 ECH