Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2575 ATGGCTGTGGAGAACCAAAGGGGTCATTTGGGGGATGAAGATGGGGGCAGTGACCGTTTTCCTGTGGGTATGCGTGTTCTTGCTGTGGATGACGACCCAACTTGCCTTATTGTGTTGGAGAACCTGCTTCGCAAATGCCAGTATCAGGTTACCACAACTAATCAGGCAGTTGAGGCGCTGAAAATGTTGAGGGAAAACAGAAATAAGTTTGACCTCGTTATTAGTGATGTGAGTATGCCTGACATGGATGGATTTAAGCTCCTTGAATTGGTGGGACTTGAAATGGACCTACCTGTCATCATGTTGTCATCACACAGTGATACAAAGCTGGTGATGCAGGGTGTTACACATGGGGCATGTGACTATTTGCTGAAACCTGTTCGAATTGAAGAGCTGAAGAACATATGGCAACATGTGATCCGAAGAAAGAATTTTGATTCCAGGGATCAGAATAAAGCTTCCAATGAGGAAAGGGCACTTACTACTGCTGGGGAAGGTAGTCAAGGCCTCAAATCAGATAACAGTGCTGACCAGAATAAAAAGCTTGGTAAAAAACGGAAGGACCAAAGTGAAGAAGATGAAGAAGATGGTGAAGGGAATGGAGATGAGGAGGATCCCTCAACACCGAAGAAACCTCGTGTAGTTTGGTCTGTTGAGCTGCATAGAAAATTTGTTGCTGCTGTTAATCAACTGGGCCTAGAGAAGGCTGTTCCTAAGAAAATACTTGACCTGATGAATGTCGATGGGCTTACAAGGGAAAACGTTGCAAGCCATCTACAAAAATATAGACTCTATCTGAAAAAGGCAACCCAGCAAGCTAGCATGGTTGCTGCATTAGGTAGTGGTGATTCTTATCTACGTATGAGTTCATTAGATGGATATGGAGATTTTTGCACTTCACCTGGATCAGGAAGGATCTCAAGCTCCACATTACCATCATATGCATCCAGTGGAATTTTTGGTAGGCTGAATTCACCATCTGGCTTGAGCATGAGAGGAATTAGTTCTTCTTCACTAATCCGGCCTGTTCAGTCACAAAACATTAATAGCTCCTTAAACACACTTGGAAACATTCAGCCTTCCATGTTTCCAGCAAATCAAAGCTCAAGTTTATTACCAGGTATTCCAACATCAATTGAGCTTGACCAATCTAAGCAAGGCAACTGTACAACAGGAATATCACAGTTAAATCATGTTGACTCAAGTGGATTTGCAGTTGCCTCTGGCTTCCCAGACAGCAGAGCCACTGTTAATGGTGCAAACAATCACATGATGTTACAAGGAAATCCACCACAAACTCATAACCCAGGACCATTTAGAACTCAGCCTTCTGTTAGAGCGCCTTCCTTGAGTACAGAGTCTTTTGACATCAGCATGTGTGGTTCTTCTAATCTGTTGGATTATAATCGGTGTAATGAAAATTGGCAGAGTGCAGCCCAGTTATCTAAATATCCTGCCAATTCTTTACCACTGTGTGAGGCTTTCAGTAATGAGCAATTGCCTCGCACTAGCATAAATGTTTCCAACTCAAGTACTCATATTGGTAACAATCCAGTTGATTTTTCTTCCAGAAATCCAATTCCTGTTCCTTTGGAGGATGCCAGAAATGAGCTGCAATGCCAAGAAGGCTTGATCGGGAATATTGTACACCCTTCGAGTTACACACCACAACAAAGGTGGGAAGAACAACATAAACTGGATTACAACCAGAATATTACTCGTCCCTTCAATCCTGTAAAATCTCATGTTTCTTCCAGCGGAGTGTCAAGTTCTATGGGGCATAGTTTAAACCAACATAATACAATTTGTGGCAACAGAGTTGATGCATCTTTCGTTGGTCAACTAAATGGGGCTTCCCCATCAATTGCCCGGTGCACTGAGGTTGAGAAATTCTCGTCAGACATTCGACTTAAGTCAAATGATGCCTACATTTTGGAGCAAATGAAGTCCCAAGATGGATTTATGCCGAATGCTTTTGGGACCTTGGATGACATAATGGGTGCAATGGTCAAAAGGGAGCAAAATGAGTTGACACTGATGGATGGAGAAATGGGATTTGATGCTTACCCTGTTGGATCATGTAGCTGA 2088 0.4282 MAVENQRGHLGDEDGGSDRFPVGMRVLAVDDDPTCLIVLENLLRKCQYQVTTTNQAVEALKMLRENRNKFDLVISDVSMPDMDGFKLLELVGLEMDLPVIMLSSHSDTKLVMQGVTHGACDYLLKPVRIEELKNIWQHVIRRKNFDSRDQNKASNEERALTTAGEGSQGLKSDNSADQNKKLGKKRKDQSEEDEEDGEGNGDEEDPSTPKKPRVVWSVELHRKFVAAVNQLGLEKAVPKKILDLMNVDGLTRENVASHLQKYRLYLKKATQQASMVAALGSGDSYLRMSSLDGYGDFCTSPGSGRISSSTLPSYASSGIFGRLNSPSGLSMRGISSSSLIRPVQSQNINSSLNTLGNIQPSMFPANQSSSLLPGIPTSIELDQSKQGNCTTGISQLNHVDSSGFAVASGFPDSRATVNGANNHMMLQGNPPQTHNPGPFRTQPSVRAPSLSTESFDISMCGSSNLLDYNRCNENWQSAAQLSKYPANSLPLCEAFSNEQLPRTSINVSNSSTHIGNNPVDFSSRNPIPVPLEDARNELQCQEGLIGNIVHPSSYTPQQRWEEQHKLDYNQNITRPFNPVKSHVSSSGVSSSMGHSLNQHNTICGNRVDASFVGQLNGASPSIARCTEVEKFSSDIRLKSNDAYILEQMKSQDGFMPNAFGTLDDIMGAMVKREQNELTLMDGEMGFDAYPVGSCS* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2575 695 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Apr1g2575 695 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 676 - -
Apr1g2575 695 SUPERFAMILY Homeodomain-like 208 268 IPR009057 -
Apr1g2575 695 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Apr1g2575 695 Gene3D - 208 269 - -
Apr1g2575 695 SMART REC_2 24 136 IPR001789 GO:0000160
Apr1g2575 695 MobiDBLite consensus disorder prediction 177 192 - -
Apr1g2575 695 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Apr1g2575 695 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Apr1g2575 695 Gene3D - 24 204 - -
Apr1g2575 695 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 676 IPR045279 GO:0009736
Apr1g2575 695 SUPERFAMILY CheY-like 23 148 IPR011006 -
Apr1g2575 695 CDD REC_typeB_ARR-like 26 140 - -
Apr1g2575 695 MobiDBLite consensus disorder prediction 156 176 - -
Apr1g2575 695 PIRSF RR_ARR_type-B 1 695 IPR017053 GO:0003677|GO:0003700|GO:0009736
Apr1g2575 695 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Apr1g2575 695 MobiDBLite consensus disorder prediction 147 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2575 Apr-Chr1 35217736 35223164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2575 18 437 Response Regulator Gene Family AT2G25180 51.408 1.48e-123 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Apr1g2575 Response_reg 1e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2575 K14491 - gmx:100776075 1136.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2575 1 35217736 35223164 Apr1g2575 1 35217736 35223164 ECH