Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2564 ATGCAACAAAACAAAAAATATACACGACCTTATTTTATTCTGACACCATTGCCTTTGCTTGGGGTACTTACAATTGTCCCTCTTCCTTATGCTCTTCAAGTTCCAATGGAGATTTTCAAATGCTTGTACTTCAATCTTCTCGCCACCTTCATGTTATCAACAGTTTTAGCAATCGACCCTTACTCAGAGGCACTCTTGAGCTTAAAATCTGAAGTTGTAGATGCTGATAACAGTTTGCATGACTGGGTGGTGCCCTCTGGAGGGAAGTTAACTGGGAAATCCTATGCATGTTCTTGGTCAGGTATCAACTGTGACAATTACTCAACAAGTGTAACTTCCATAGACTTGTCCATGAAGAAACTGGCAGGTGTATTGTCAGGGAAGCAATTCAGCATCTTCACAAACCTTACTAGTCTCAACCTGAGCCACAATTTCTTCTCTGGGCACCTGCCAGCAGAGATTTTCAACCTCACAAGCCTCAGAAGCTTGGATATCAGCAGAAACAATTTTTCTGGACCCTTCCCAGGTGGAATTCCCAGCCTCAAAAATTTGGTTGTGCTTGATGCCTTTAGCAACAGCTTTTCAGGGCCATTACCTGCTGAATTTTCACAGTTAGCATATCTTAAAGTTCTTAATCTAGCTGGGAGCTACTTCAAAGGATCAATACCATCTGAATATGGTTCTTTCAAAAGCCTTGAGTTTCTTCATCTTGCAGGAAATTCTCTAACAGGAAGTATACCTCCAGAACTGGGAAACCTCAAAACAGTGACCCACATGGAGATAGGCTACAACTTATACCAGGGTTCTATTCCATCCCAGATAGGTAATATGAGTCAGCTTCAGTATCTTGACATAGCAGGAGCAAATCTATCAGGTCCAATACCAAAGCAACTCTCCAACCTCACCAGTTTGCAATCACTTTTTCTATTCAGAAACCAGCTCACAGGATCAGTACCAAGGGATCTCAGCAAAATCACACCTCTGGCAGATTTTGATCTCTCTGATAACTTCCTTTCAGGGTCCATTCCTGAAAGTTTTTCAGAGTTGAAGAACCTAAGACTGCTCAGTCTCATGTACAATGACATGAGTGGCACTGTTCCCGAAGGCATTGCACAGCTACCATCCTTGGAAACTCTCCTCATTTGGAGCAACCGCTTCTCTGGATCACTTCCACAGAGCTTAGGCAGAAACTCCAAACTCAAGTGGGTTGATGCTTCCACAAACAGTTTAGTTGGAAGCATTCCACCAGACATTTGTGTGAGTGGAGTACTATTTAAGCTAATTCTGTTTTCAAACAAATTCACAGGTGGTCTTTCATCAATTTCCAACTGTTCTTCTCTTGTTCGTCTTCGCCTAGAAGAGAATTCATTCTCAGGAGACATCCCTTTGAAATTCAGCCATCTTCCTGATATCTTATATGTTGATCTATCCAGGAACGACTTTGTTGGCGGGATTCCCTCGGATATTTCTCAAGCTACTCAACTGGAGTATTTCAATGTCTCTTATAATCAGCAATTAGGAGGCATCATACCTGCAAGAATTTGGTCTTCGCCCCAACTTCAAAATTTTTCAGCATCTTCTTGTGGTATTTTAGGAGATCTTCCCCCATTTGAGTCCTGCAAATCCATTTCAGTTATTGATCTAGATAGGAACCACATAACTGGAATCATCCCAAACAGTGTTTCCAAATGTCAATCTCTTGAGAAAATCAAGTTATCTAACAATAATCTGGCAGGTCATATACCTGATGAACTTGCTAGTATTCCAGTTCTTGGTGTACTGGACCTATCAAACAACAGGATCAATGGCCGCATACCTGCAAAGTTCGGTAGTTCTTCTAGTTTACAACTTCTCAATGTGTCGTTCAACAATATCTCTGGTTCAATACCTGCAGGAAAGTTATTCAAATTGATGGGTAGCAGTGCATTTGCTGGAAATTCAGAGCTATGTGGAGCACCACTGCAACCATGTCCTGATTCAGTTGGAATATTGGGTGGCAAAGGCACGTGGAATATTACACGTATTGTGCTACTCTCTGTAGGGTTGCTAATAGTCCTTCTTGGATTGGCTTTTGGAGTATTTTATTTCAGAAAGGGACTTAAAAGTCAATGGAAGATGGTCTCATTTGCTGGTCTCCCTCAATTCACAGCAAATGATGTTTTGACAAGCCTCAATTCCACAAAGCCTACAGAAGTTCCATCGCCATCACCTGTAGTTACAAAGGCTGTTCTTCCTACAGGAATAACGGTTTTGGTCAAGAAGATTGAATGGGAAGCGAGAAGCATTAAGGTTGTGTCAGAATTTATAATAAGACTAGGGAATGCAAGGCACAAGAATTTAATCAGATTGTTGGGATTTTGCCACAACCAGCATCTAGTCTATCTTTTGTACGATTACTTGCCCAATGGGAATTTGGCTGAGAAAATTGGAACCAAATGGGATTGGGCAGCAAAATTCAGAACAGTAATGGGAATTGCAAGGGGACTTTGCTTCCTTCACCATGACTGTTACCCAGCAATACCACATGGAGACTTGAGGTCCAGCAATGTTGTATTTGACGAAAATTTGGAACCCCATTTGGCAGAATTTGGGTTCAAACATTTGTTTAAGTTGAGCAAAGGCTCATCACCAACCACAACTAAGTGGGAGACAGAAAACAATGAAGCAACGAAGGAGGAACTATGCATGGATATCTACAAATTTGGGGAGATGATTTTGGAAATTTTAACTAGTGGAAGATTGACAAATGCAGCAACTGGCATACATAGCAAACCATGGGAGGTTCTTTTAAGAGAAATTTACAATGAGAATGAAACAAGTTCTGCCAGTTCATTGCAAGAGATTAAACTGGTTCTTGAGGTTGCTATGCTTTGCACCAGAAGCAGGTCATCCGATCGGCCATCCATGGAAGATGCTCTGAAGCTTTTGTCAGGGATAAAGCATCTAGATGATGGCAGAACTTCAAAAGAAGGGCCATAA 2979 0.4139 MQQNKKYTRPYFILTPLPLLGVLTIVPLPYALQVPMEIFKCLYFNLLATFMLSTVLAIDPYSEALLSLKSEVVDADNSLHDWVVPSGGKLTGKSYACSWSGINCDNYSTSVTSIDLSMKKLAGVLSGKQFSIFTNLTSLNLSHNFFSGHLPAEIFNLTSLRSLDISRNNFSGPFPGGIPSLKNLVVLDAFSNSFSGPLPAEFSQLAYLKVLNLAGSYFKGSIPSEYGSFKSLEFLHLAGNSLTGSIPPELGNLKTVTHMEIGYNLYQGSIPSQIGNMSQLQYLDIAGANLSGPIPKQLSNLTSLQSLFLFRNQLTGSVPRDLSKITPLADFDLSDNFLSGSIPESFSELKNLRLLSLMYNDMSGTVPEGIAQLPSLETLLIWSNRFSGSLPQSLGRNSKLKWVDASTNSLVGSIPPDICVSGVLFKLILFSNKFTGGLSSISNCSSLVRLRLEENSFSGDIPLKFSHLPDILYVDLSRNDFVGGIPSDISQATQLEYFNVSYNQQLGGIIPARIWSSPQLQNFSASSCGILGDLPPFESCKSISVIDLDRNHITGIIPNSVSKCQSLEKIKLSNNNLAGHIPDELASIPVLGVLDLSNNRINGRIPAKFGSSSSLQLLNVSFNNISGSIPAGKLFKLMGSSAFAGNSELCGAPLQPCPDSVGILGGKGTWNITRIVLLSVGLLIVLLGLAFGVFYFRKGLKSQWKMVSFAGLPQFTANDVLTSLNSTKPTEVPSPSPVVTKAVLPTGITVLVKKIEWEARSIKVVSEFIIRLGNARHKNLIRLLGFCHNQHLVYLLYDYLPNGNLAEKIGTKWDWAAKFRTVMGIARGLCFLHHDCYPAIPHGDLRSSNVVFDENLEPHLAEFGFKHLFKLSKGSSPTTTKWETENNEATKEELCMDIYKFGEMILEILTSGRLTNAATGIHSKPWEVLLREIYNENETSSASSLQEIKLVLEVAMLCTRSRSSDRPSMEDALKLLSGIKHLDDGRTSKEGP* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2564 992 ProSiteProfiles Protein kinase domain profile. 704 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2564 992 Pfam Leucine rich repeat 110 170 IPR001611 GO:0005515
Apr1g2564 992 Pfam Leucine rich repeat 328 385 IPR001611 GO:0005515
Apr1g2564 992 Pfam Protein tyrosine and serine/threonine kinase 747 974 IPR001245 GO:0004672|GO:0006468
Apr1g2564 992 SUPERFAMILY Protein kinase-like (PK-like) 738 977 IPR011009 -
Apr1g2564 992 SUPERFAMILY L domain-like 411 657 - -
Apr1g2564 992 Gene3D Ribonuclease Inhibitor 60 215 IPR032675 -
Apr1g2564 992 SMART LRR_typ_2 229 253 IPR003591 -
Apr1g2564 992 SMART LRR_typ_2 133 157 IPR003591 -
Apr1g2564 992 SMART LRR_typ_2 301 324 IPR003591 -
Apr1g2564 992 SMART LRR_typ_2 588 612 IPR003591 -
Apr1g2564 992 SMART LRR_typ_2 373 397 IPR003591 -
Apr1g2564 992 Gene3D Ribonuclease Inhibitor 539 657 IPR032675 -
Apr1g2564 992 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE 39 981 - -
Apr1g2564 992 Gene3D Transferase(Phosphotransferase) domain 1 798 990 - -
Apr1g2564 992 PANTHER UNNAMED PRODUCT 39 981 - -
Apr1g2564 992 SUPERFAMILY RNI-like 113 435 - -
Apr1g2564 992 Gene3D Ribonuclease Inhibitor 216 321 IPR032675 -
Apr1g2564 992 Gene3D Ribonuclease Inhibitor 322 420 IPR032675 -
Apr1g2564 992 Gene3D Phosphorylase Kinase; domain 1 736 797 - -
Apr1g2564 992 ProSitePatterns Tyrosine protein kinases specific active-site signature. 840 852 IPR008266 GO:0004672|GO:0006468
Apr1g2564 992 Gene3D Ribonuclease Inhibitor 421 536 IPR032675 -
Apr1g2564 992 Pfam Leucine rich repeat N-terminal domain 63 105 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2564 Apr-Chr1 35154919 35158544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2564 41 977 Receptor kinase-like Gene Family AT5G51350 56.013 0.0 983
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr1g2564 PK_Tyr_Ser-Thr 5.8e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2564 - - aprc:113852384 1944.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2564 1 35154919 35158544 Apr1g2564 1 35154919 35158544 ECH