Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2553 ATGGCTTTCCACGACCATCTACCGCACGAAATCACGTTTCAGCCATTCACGGACGAGCAGCAGTTAGGTCAGAGCAGAGACATGCAGAGGCTGCTTCCACTCTCGGCCGCCTCCGGCGGCGGCGGCGCGGGGCCGACGTGGCTGAACAGTAACGCCGCCACGCTCCGGCAGCAGAATTTTCTCCACTTGCAACCCGACTCGACCGCGCACCAAAACGACGACGTTCGGGGGAGCATGATGGGATCGGAGAAAAGCTTGGATCGGAACCGGACGGAAAGTAACTCGGAACCAGACGCTTTGGCGGAATACAAAGCTGACATTTTGGGACACCCACTTTACGATCAGCTCTTATCGGCTCACGTTTCGTGTTTGAGGATCGCAACGCCCGTTGACCAGCTTCCGAGGATCGACGCGCAGCTTCAACAGTCGCAGCGCGTCGTTGATAAGTACTCTGGCCTTGGAAATGGAGTCGTCGATGACAAGGAGCTCGATCAATTCATGACTCATTATGTTCTACTGCTCTGCGCTTTTAAAGAACAATTGCAACAACATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTAGAGCAATCTCTACAAAGCTTGACTGGTGTATCTCCCGGCGAAGGAACGGGTGCAACAATGTCGGATGACGAAGAAGACCAGGCAGAGAGCAATGCGAACTTATACGAAGGAAGCTTGGATGGAGCTGATAGTCTAAGCTTTGGTCCTCTTGTGCCCACTGAAAGTGAAAGATCTTTGATGGAGCGTGTGAGGCAGGAGTTGAAGCATGAGTTGAAACAGGGTTACAAGGACAAGATTGTTGACATCAGAGAAGAAATTCTACGAAAGAGGAGAGCGGGGAAGCTCCCAGGCGACACCACTTCCCTTTTGAAAGCTTGGTGGCAGTCACATTCCAAATGGCCCTATCCGACAGAAGAAGACAAGGCAAGGTTGGTGCAAGAAACAGGCTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGAAAAAGGAATTGGCATACGAATCCTTCTTCTTCTAGTGGCTCCAAAAGCAAGCGAAAGAGTGGCGCAGGAGAAACAAGTAACCAGAGCTTCATGTGA 1122 0.5089 MAFHDHLPHEITFQPFTDEQQLGQSRDMQRLLPLSAASGGGGAGPTWLNSNAATLRQQNFLHLQPDSTAHQNDDVRGSMMGSEKSLDRNRTESNSEPDALAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNGVVDDKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEEDQAESNANLYEGSLDGADSLSFGPLVPTESERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKSGAGETSNQSFM* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2553 373 SMART KNOX2_2 153 208 IPR005541 GO:0003677|GO:0005634
Apr1g2553 373 Pfam ELK domain 265 286 IPR005539 GO:0003677
Apr1g2553 373 Gene3D - 284 363 - -
Apr1g2553 373 ProSiteProfiles ELK domain profile. 265 285 IPR005539 GO:0003677
Apr1g2553 373 SMART ELK_2 265 286 IPR005539 GO:0003677
Apr1g2553 373 SMART HOX_1 287 352 IPR001356 GO:0003677
Apr1g2553 373 Pfam Homeobox KN domain 305 344 IPR008422 GO:0003677|GO:0006355
Apr1g2553 373 MobiDBLite consensus disorder prediction 67 97 - -
Apr1g2553 373 SMART KNOX1_2 101 145 IPR005540 GO:0003677|GO:0005634
Apr1g2553 373 Pfam KNOX2 domain 157 207 IPR005541 GO:0003677|GO:0005634
Apr1g2553 373 MobiDBLite consensus disorder prediction 342 373 - -
Apr1g2553 373 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 36 366 - -
Apr1g2553 373 SUPERFAMILY Homeodomain-like 287 351 IPR009057 -
Apr1g2553 373 MobiDBLite consensus disorder prediction 207 228 - -
Apr1g2553 373 ProSiteProfiles 'Homeobox' domain profile. 285 348 IPR001356 GO:0003677
Apr1g2553 373 MobiDBLite consensus disorder prediction 80 97 - -
Apr1g2553 373 CDD homeodomain 288 349 IPR001356 GO:0003677
Apr1g2553 373 Pfam KNOX1 domain 103 144 IPR005540 GO:0003677|GO:0005634
Apr1g2553 373 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 36 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2553 Apr-Chr1 35052191 35056531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2553 47 368 Homeobox Transcription Factor Family AT5G11060 73.313 8.74e-168 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Apr1g2553 KNOX2 4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2553 - - gmx:100816347 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2553 1 35052191 35056531 Apr1g2553 1 35052191 35056531 ECH
Apr9g2733 9 34317383 34324771 Apr1g2553 1 35052191 35056531 PCT