Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2550 ATGGCTGGAATGCTTCCAGGAGTTGAATGTGCTCGAAGGAGACGCTTCCATCAGAGTGGAGGATACATGGATTTACCTTCTTTAGCTTCTCATACATCCACAAGGCGTTCTTCTTTCTGTTTATATGCAAGTAACCATGAATCCCGTTTTTCTTCACTGCAAAGGAGCAATTTGTACCAGGCACACCCTGATGAGAACATGCTAGGAGCTGCCAGAGAAGCCAAACAGAGGTTGGATGACAAGTTCAGAGCACAAAGGATGTCAGAAAACCAAAGCATGAGGTGTGTGGAGGGTGGAAGAACAAGCTTAGCAGAATTGCAAACAGAGGTATATGGGTCAAAGAAAAGAGGTTCAAGGAAGTTGAGTTGGATCAAATGGAGCTGGAAAGCCTCAGAACAAGAGGATTGTGCAGTGTGCTTGGAATCATTCAGGGTCGGAGAGACACTAATCAATCTCCCTTGTGCCCATAGGTTCCATTCTAATTGCTTGAAACCATGGTTAGAAAATAATTCTCATTGTCCATGCTGCAGAACCACCATTCTTTCCCTCTAG 552 0.4457 MAGMLPGVECARRRRFHQSGGYMDLPSLASHTSTRRSSFCLYASNHESRFSSLQRSNLYQAHPDENMLGAAREAKQRLDDKFRAQRMSENQSMRCVEGGRTSLAELQTEVYGSKKRGSRKLSWIKWSWKASEQEDCAVCLESFRVGETLINLPCAHRFHSNCLKPWLENNSHCPCCRTTILSL* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2550 183 Pfam Ring finger domain 135 177 IPR001841 -
Apr1g2550 183 SMART ring_2 136 176 IPR001841 -
Apr1g2550 183 ProSiteProfiles Zinc finger RING-type profile. 136 177 IPR001841 -
Apr1g2550 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 182 IPR013083 -
Apr1g2550 183 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 95 - -
Apr1g2550 183 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 102 179 - -
Apr1g2550 183 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 102 179 - -
Apr1g2550 183 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 95 - -
Apr1g2550 183 CDD RING-H2_PA-TM-RING 135 177 - -
Apr1g2550 183 SUPERFAMILY RING/U-box 123 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2550 Apr-Chr1 35034932 35036307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2550 1 83 C3H Transcription Factor Family AT2G15580 47.368 6.92e-20 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2550 - - gmx:100527583 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2550 1 35034932 35036307 Apr1g2550 1 35034932 35036307 ECH