Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2548 ATGTGTGTGCAAGACGAAGAGCAAGTTGTTCAAGATATGGACAATAATAGCGCAACCAATTCATGGCCTTTGCATTGTGATCTTTTTCTGATGGACAAAACTGAATCTTTTCTCAGAACTTCAAGTGACATCAATATCACTGCTCAAAACTCACGTCCTCTGGAAAGCATATTTGAGGACGCAGTGGTTGCGGAGAAGAAACAGAATCTGATGAATTTTGTCCCAGCGCTTCGGTCTGGAGAGTGGTCTGATATTGGAAAACGCCCTCACATGGAGGATACTCACATATGCATTGGAGATTTGGCTAAGAAGTTTAATAGTAACGTACTATCTGAGGAAGCCGTTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTTGTCCGTGATCATCTGCCAAGACTTATTGTTGAGGATGTTAACTTTCCTTTGGAGCTTGAGAAAGTAATGAAAAGGTCATTTTTGGAGACTGATGCTGCATTTTTACAAGCATCCTCTCATGAGCCTTCCCTTTCTTCTGGTACAACTGCACTAACTGCAATTATATCTGGAAGGTCTTTACTCGTAGCCAATGCTGGAGACTGCCGAGCTGTCTTGTCCCATCATGGAAGGGCTATGGAAATGTCCAAAGATCATACCCCAAACTGCATCGAGGAAAGGATAAGGATTGAGTCCCTAGGTGGATTTATTGTTGAGGGTTACCTGAATGGCCAATTAGGTGTCACCCGTGCTCTTGGAGACTGGCACCTTGAAGGAATGAAGGAAATGAATGAAAGGGGTGGACCACTAAGTGCTGAACCTGAGCTTAAATTGATGACATTGACCAAAGAAGACGAATTCTTGCTAATTGCTAGTGATGGAATATGGGATGTTTTTAGTTGCCAAAATGCTGTAGATTTTGCTAGAAGGAGGCTTCAAGAGCATAATGATGAGAAACTATGCTGCATGGAAATAGTACAAGAAGCAATCAAGAGAGGATCAACAGACAATTTGACAGTTGTTATGGTATGTTTTAACTCGGATCCACCACCACCTGTGGTTGTTGAAAGAGCACGAGTAAGAAGAAGCATATCTGCTGAGGGACTTCAGAATCTTAAACGCCTGCTAAAAGTATAA 1131 0.4218 MCVQDEEQVVQDMDNNSATNSWPLHCDLFLMDKTESFLRTSSDINITAQNSRPLESIFEDAVVAEKKQNLMNFVPALRSGEWSDIGKRPHMEDTHICIGDLAKKFNSNVLSEEAVSFYGVFDGHGGKSAAQFVRDHLPRLIVEDVNFPLELEKVMKRSFLETDAAFLQASSHEPSLSSGTTALTAIISGRSLLVANAGDCRAVLSHHGRAMEMSKDHTPNCIEERIRIESLGGFIVEGYLNGQLGVTRALGDWHLEGMKEMNERGGPLSAEPELKLMTLTKEDEFLLIASDGIWDVFSCQNAVDFARRRLQEHNDEKLCCMEIVQEAIKRGSTDNLTVVMVCFNSDPPPPVVVERARVRRSISAEGLQNLKRLLKV* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2548 376 ProSitePatterns PPM-type phosphatase domain signature. 117 125 IPR000222 GO:0043169
Apr1g2548 376 SUPERFAMILY PP2C-like 69 345 IPR036457 -
Apr1g2548 376 SMART PP2C_4 68 341 IPR001932 -
Apr1g2548 376 CDD PP2Cc 78 343 IPR001932 -
Apr1g2548 376 Gene3D - 58 346 IPR036457 -
Apr1g2548 376 Pfam Protein phosphatase 2C 88 335 IPR001932 -
Apr1g2548 376 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 1 364 - -
Apr1g2548 376 PANTHER PROTEIN PHOSPHATASE 2C 1 364 IPR015655 GO:0004722|GO:0006470
Apr1g2548 376 ProSiteProfiles PPM-type phosphatase domain profile. 78 343 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2548 Apr-Chr1 35021279 35024174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2548 67 374 PP2C-type Phosphatase Gene Family AT2G25620 58.974 1.19e-128 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Apr1g2548 PP2C 2.6e-68 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2548 K14803 - gmx:100813157 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2548 1 35021279 35024174 Apr1g2548 1 35021279 35024174 ECH
Apr9g2740 9 34366268 34370008 Apr1g2548 1 35021279 35024174 PCT