Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2537 ATGGGGAAGAAAAAGAAGCAAGTAGGAGAAACAAGTGAAGATAGAGGAAATCATAGTAAAGTTGAAGATAAAAGCCCCAAAGCATATGACAATGATACTTTGGTGTTTATATCTATGTCTCAAGACTTGAAGGATGAGGGGAACAAACTGTTCCAGAAGCGGGATCTCGAAGGAGCTTTGGTAAAATATGAGAAAGCCCTCAAATTGCTTCCAAGAAATCATATAGATGTGTCCTATTTGCGGAGTAATATGGCTGCTTGCTACATGCAGATGGGACTCAGTGAGTACCCTAGGGCAATCCATGAATGCAATTTGGCTCTTGACGTAACACCAAAATACAGTAAAGCTCTGCTGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAGGCTGGATTTTGCACTGAGAGATGTGAGCACTGTTTTAAAGATGGAGCCAAATAATATCATGGCATTGGAGGTCTCAGATAAGGTAAAATGTGCACTTGAAGATAAAGGATTAAGAGTGAATGACACGGAAATTGAGTTGCCTCCAGATTATGTTGAACCTCCTAATGCTTTGCCTCCGAAAAAAGTAGAGAAAGAAAAGACACGGAAGAAGAAGAGCAACAGAGAGAAGGTGAAGGCTCCTGATAAAATTGAAGAAAAGCGAGCTGAGGAGAAATTGGAAGAGAAGAAAGACCAGGAAAGAATTGTCATTGAGGAAAAACCCAATGGTAGAAGTGAAGATATACCTAAGAAAGCAGCAAAACTTATTTTTGGTGAGGATATAAGATGGGCTGAATTGCCAGTTAATTGCACCCTCTTTCAGCTAAGAGAAGTTATTTGTGATCGCTTCCCAAGATTAGGAGCAGTTCTTGTCAAATATAGGGACCAAGAAGGTGATCTGATTACTATCACTTCTGATGAAGAATTAAGGTGGGCTGAAACAGGATCACAGGGTTCTATCCGGCTGTACATTGTAAAAGCTAATCCTGATCTTGATCCATTCTTTGAGAAACTTAATCTGAAGAACAGAGAAAAGGTTGGCATTGATAATGCTCCAGTGAATGGTTCCGTGGTGAAGACAAATGATATTATTAGCTCATCTTGCATAGAGGATTGGATAATTCAGTTTGCACAACTGTTCAAGAACCATGTTGGGTTTGAATCTGACCGGTATTTAGATTTTCATGAACTTGGGATGAAGCTCTATTCAGAGGCTGTGGAGGAGGCAGTTGCAAGTGAAGAAGCACAAGGCTTATTTGACATGGCTGGTGGTAAGTTCCAAGAGATGGCAGCTCTAGCATTGTTCAACTGGGGAAATGTGCATATGTCCAGGGCAAGAAAGAAAGTGTATTTAACTGATGATTCTTCTAAAGAGCATATGTTTGAACAAATAAAAAATTCATATGAATGGGCGCAGAAAGAATATGCAAAAGCTGGAGAAAAATATGAAGCAGCCATTAAAATTAAATCAGACTTTTATGAAGGCTTCCTGGCATTTGGCCAGCAGCAGTTCGAGCAAGCAAAACTTTCTTGGTATTATGCACTCTGTAATAACGTAGATTTAGCCACGTGGCCCTCCACTGAGGTTCTTCAGCTTTACAACAGTGCTGAGGATAATATGGAGAAAGGAATGCTGATATGGGAAGAATCAGGAGAGCAGCAGTTGAGTGAAGCCTCCAATTCCAAGGATATTAGATTTCATTTGCAGAACATGGGGTTGGATGGGCTATTAAAAAATATGTCATCAGATGAAATTGCTGCACAGGTGGCAAATATGAGGTCTCAAATAAATCTTCTGTGGGGTACCATGCTATATGAACGCTCAATAGTGGAGTTCAAATTAGGGCTACCGGTATGGCATGAATCTCTGGAAGTTGCAGCTGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACAGATATAGCTGTAATGTTGAAGAACCACTGTTCAAATAACACTGCTGTAGATGGTCTTGGATTCAAAATTGATGAAATAGTACAGGCTTGGAATGAGATGTATGAAGCTAAAAAGTGGCAGAAAGGAGTTCCATCATTTCGTTTGGAGCCCTTGTTTAGAAGAAGAATATCAAAAATTTACCATGCCTTTGAGCTTGTATGA 2100 0.401 MGKKKKQVGETSEDRGNHSKVEDKSPKAYDNDTLVFISMSQDLKDEGNKLFQKRDLEGALVKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALDVTPKYSKALLKRARCYEALNRLDFALRDVSTVLKMEPNNIMALEVSDKVKCALEDKGLRVNDTEIELPPDYVEPPNALPPKKVEKEKTRKKKSNREKVKAPDKIEEKRAEEKLEEKKDQERIVIEEKPNGRSEDIPKKAAKLIFGEDIRWAELPVNCTLFQLREVICDRFPRLGAVLVKYRDQEGDLITITSDEELRWAETGSQGSIRLYIVKANPDLDPFFEKLNLKNREKVGIDNAPVNGSVVKTNDIISSSCIEDWIIQFAQLFKNHVGFESDRYLDFHELGMKLYSEAVEEAVASEEAQGLFDMAGGKFQEMAALALFNWGNVHMSRARKKVYLTDDSSKEHMFEQIKNSYEWAQKEYAKAGEKYEAAIKIKSDFYEGFLAFGQQQFEQAKLSWYYALCNNVDLATWPSTEVLQLYNSAEDNMEKGMLIWEESGEQQLSEASNSKDIRFHLQNMGLDGLLKNMSSDEIAAQVANMRSQINLLWGTMLYERSIVEFKLGLPVWHESLEVAAEKFELAGASPTDIAVMLKNHCSNNTAVDGLGFKIDEIVQAWNEMYEAKKWQKGVPSFRLEPLFRRRISKIYHAFELV* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2537 699 Coils Coil 214 234 - -
Apr1g2537 699 ProSiteProfiles PB1 domain profile. 245 322 IPR000270 GO:0005515
Apr1g2537 699 SMART PB1_new 245 322 IPR000270 GO:0005515
Apr1g2537 699 MobiDBLite consensus disorder prediction 173 212 - -
Apr1g2537 699 Pfam PB1 domain 249 320 IPR000270 GO:0005515
Apr1g2537 699 PANTHER PROTEIN PHOX3 2 698 - -
Apr1g2537 699 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Apr1g2537 699 Gene3D - 249 321 - -
Apr1g2537 699 Gene3D Tetratricopeptide repeat domain 38 165 IPR011990 GO:0005515
Apr1g2537 699 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Apr1g2537 699 SMART tpr_5 40 73 IPR019734 GO:0005515
Apr1g2537 699 SMART tpr_5 114 147 IPR019734 GO:0005515
Apr1g2537 699 SMART tpr_5 78 113 IPR019734 GO:0005515
Apr1g2537 699 PANTHER PROTEIN CLMP1 2 698 IPR044517 -
Apr1g2537 699 MobiDBLite consensus disorder prediction 1 27 - -
Apr1g2537 699 CDD PB1 249 319 - -
Apr1g2537 699 SUPERFAMILY CAD & PB1 domains 248 330 - -
Apr1g2537 699 MobiDBLite consensus disorder prediction 187 212 - -
Apr1g2537 699 SUPERFAMILY TPR-like 41 153 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2537 Apr-Chr1 34930047 34935378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2537 23 147 Calmodulin-binding Proteins AT3G25230 30.935 5.39e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2537 - - gmx:100820306 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2537 1 34930047 34935378 Apr1g2537 1 34930047 34935378 ECH
Apr9g2753 9 34470570 34475184 Apr1g2537 1 34930047 34935378 PCT