Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2536 ATGGGTCGTGCAAGAATAACCTTGAAACGGATCCCAAAGGAGAGAACTCGCAAGCTAACTTTCAAGCAGAGAAGCAAAGGACTAATGAAGAAAATCGCTGAATTTTCAACCATGTGTGGAGCTGAAGCTTGCTTCATTGTGTATGATGGTAATGGTAATGTTGAACCAATGACTTGGCCTGAAGACTCCAGAGTAGTACATTCCATCATTGAAAAGTATGAGAATCAAAAGAATGAGAGACCTCCTAAGACCTTCAATATTGAAGACTTTTTTGAGAATAGAAAGAACATGGTTGAAGCTGAAATTTCTAGGGTGCAAAAAGAGATCTCTAAGATCAAGTATCCAACTTGGGATAAAAGTTATAGTAAGCTGGGTGAGGAGCAATTAAAGGCCTTCATTGCTATGTTGGATGCTAAGATTGGAGCATGTGATCATAGAATTAACATGTTCAAAAATATGCATCAAAGTGAAGCCAACTTCAATTTCATTCAAAATATGGTTCATGAGGGTGCTACCTCCTCCCATGCAAGCCAACTCAATTTCATGCAAAATGTCTCTCAAAGCCAACGCATCCCTATTCCTTTGAGTCAAATCAATGATAATAATGGGATGGCAAATTTTACTAATTCAACAAATCAGGTTGATGAGGCTTACTTTCATAGAACTAACATGTTGGCAAACTTGCAACAGGGTGACGCTTATTTTAATTTCATGCCAAACATGGCTCAAGTAAGTGGTGCCCCCTCACATGGAAGCCAGCTCAATTTCATGCAGAACATCTCTGAGACCCAACACAACTTTGAAAGTTTGAGGCCACAAGATGATAATAATGGGATGGTAAATTTTACCAATCCAGTTGACATGCCTCAAGATTCAACTAATCAACTCGGTGAGTCTAATACAAACTTTGCTAATCATTTGGGAGAATTTGAGCGTTGGGTTGATGAACCTACTGAGATTGAGGAGTGGATTAATCAACTAGGTGGTGATCTTGTGGACACAGTGAGTCAACTTGATGAATCTGTTTTGCAGAATACTCGTGTTCAATCACAAAATGACCGTAATTGA 1068 0.3895 MGRARITLKRIPKERTRKLTFKQRSKGLMKKIAEFSTMCGAEACFIVYDGNGNVEPMTWPEDSRVVHSIIEKYENQKNERPPKTFNIEDFFENRKNMVEAEISRVQKEISKIKYPTWDKSYSKLGEEQLKAFIAMLDAKIGACDHRINMFKNMHQSEANFNFIQNMVHEGATSSHASQLNFMQNVSQSQRIPIPLSQINDNNGMANFTNSTNQVDEAYFHRTNMLANLQQGDAYFNFMPNMAQVSGAPSHGSQLNFMQNISETQHNFESLRPQDDNNGMVNFTNPVDMPQDSTNQLGESNTNFANHLGEFERWVDEPTEIEEWINQLGGDLVDTVSQLDESVLQNTRVQSQNDRN* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2536 355 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr1g2536 355 PANTHER PROTEIN, PUTATIVE-RELATED 3 220 - -
Apr1g2536 355 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr1g2536 355 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Apr1g2536 355 CDD MADS_SRF_like 2 74 IPR033897 GO:0000981|GO:0000987|GO:0045944
Apr1g2536 355 PANTHER MADS BOX PROTEIN 3 220 - -
Apr1g2536 355 Coils Coil 88 108 - -
Apr1g2536 355 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Apr1g2536 355 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr1g2536 355 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr1g2536 355 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr1g2536 355 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2536 Apr-Chr1 34923888 34924955 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2536 1 150 Type I MADS-box Gene Family AT5G55690 34.194 1.73e-22 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr1g2536 SRF-TF 9.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2536 - - ccaj:109809010 387.111