Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2533 ATGACGTCACGTTCGGCGCACGGTGGCAGTAGCAGCAGCAGTAGCAGGACCCGTGTGGGGAAGTACGAACTGGGTCGGACCCTGGGCGAGGGTAATTTCGCCAAAGTTAAGTTTGCGAGACACGTTGAAACTGGAGAGAACGTCGCTATCAAGATTCTCGACAAGGAAAAAGTTTTCAGGCACAAAATAATTGGCCAGATAAAACGAGAGATATCAACAATGAAACTGATTAGACACCCAAATGTGATACGTATGTTTGAGGTAATGGCTAGCAAGACAAAGATATACATTGTATTAGAATTTGTAACTGGAGGGGAGCTATTTGATAAAATTGCACGCAGCGCGAGGTTGAAAGAAGATGAAGCAAGAAAATATTTTCAACAGCTTATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTTTCATAGAGACCTAAAGCCTGAAAATTTGTTGCTGGATGCTAATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCTTTGCCTCAACAAGTTCGGGAAGATGGGCTGCTTCACACAACATGTGGTACGCCAAATTATGTTGCTCCAGAGGTGATTCACAACAAAGGCTATGATGGTGCAAAAGCAGATCTCTGGTCATGTGGTGTTATTCTTTTCGTTTTAATGGCTGGCTATTTACCCTTCGAAGAAAACAATCTTATGGCTTTATATAAAAAGATTTTCAAGGCTGAGTTCACGTGTCCTCCATGGTTCTCTTCAAGTGCAAAGAAACTAATCAATAAGATCCTTGATCCAAATCCTGCCACTAGGATTACAATTGCTGAGGTCATTCAGAATGACTGGTTCAAGAAAGGATATAAGCCTCCTGTATTTGAACAGGCTAATGTCAGTCTTGATGATATAAATTCTGTTTTCGGTGAATCTTTGGATTCACAAAATCTTGTTGTTGAGAGACGTGAAGAGGGGCCTGTGGCACCAGTGACCTTGAATGCATTTGAACTAATCGCTAAATCTCAGGGTCTCAATCTTGGTAGTCTTTTTGAGAAACAAATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTTCAGCAAATGAAATAATTTCAAAAATCGAGCAAGCTGCAGGACCCCTTGGTTTTGATGTTAAGAAGAACAACTGTAAGTTAAAGATTCAAGGGGAAAAGAGTGGACGGAAAGGTCATCTATCTGTAGCCACTGAGATCTTAGAGGTGGCCCCTTCATTATACATGGTTGAGTTGCGTAAGTCTGAAGGAGATACTCTGGAATTTCACAAGTTCTACAAAAATCTTTCTACTGGGCTGAAGGATATTGTTTGGAAAGCTGACCCTATAGATGAAGATAAAGATGGTGCTAGTCCATCAAATTAA 1380 0.4072 MTSRSAHGGSSSSSSRTRVGKYELGRTLGEGNFAKVKFARHVETGENVAIKILDKEKVFRHKIIGQIKREISTMKLIRHPNVIRMFEVMASKTKIYIVLEFVTGGELFDKIARSARLKEDEARKYFQQLICAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIHNKGYDGAKADLWSCGVILFVLMAGYLPFEENNLMALYKKIFKAEFTCPPWFSSSAKKLINKILDPNPATRITIAEVIQNDWFKKGYKPPVFEQANVSLDDINSVFGESLDSQNLVVERREEGPVAPVTLNAFELIAKSQGLNLGSLFEKQMGLVKRETRFTSKCSANEIISKIEQAAGPLGFDVKKNNCKLKIQGEKSGRKGHLSVATEILEVAPSLYMVELRKSEGDTLEFHKFYKNLSTGLKDIVWKADPIDEDKDGASPSN* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2533 459 SUPERFAMILY Protein kinase-like (PK-like) 19 291 IPR011009 -
Apr1g2533 459 Gene3D Phosphorylase Kinase; domain 1 11 101 - -
Apr1g2533 459 CDD CIPK_C 325 440 - -
Apr1g2533 459 Pfam NAF domain 321 381 IPR004041 GO:0007165
Apr1g2533 459 Gene3D Kinase associated domain 1, KA1 319 444 - -
Apr1g2533 459 Pfam Protein kinase domain 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2533 459 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 449 - -
Apr1g2533 459 CDD STKc_SnRK3 21 276 - -
Apr1g2533 459 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Apr1g2533 459 Gene3D Transferase(Phosphotransferase) domain 1 102 284 - -
Apr1g2533 459 SMART serkin_6 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2533 459 ProSiteProfiles Protein kinase domain profile. 22 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2533 459 ProSiteProfiles NAF domain profile. 319 343 IPR018451 GO:0007165
Apr1g2533 459 PANTHER SERINE/THREONINE KINASE 16 449 - -
Apr1g2533 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2533 Apr-Chr1 34882721 34894090 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2533 11 452 CBL-interacting serine-threonine protein kinases AT1G01140 68.527 0.0 653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Apr1g2533 Pkinase 1.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2533 - - gmx:100788746 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2533 1 34882721 34894090 Apr1g2533 1 34882721 34894090 ECH
Apr9g2802 9 34981210 34985685 Apr1g2533 1 34882721 34894090 PCT