Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2532 ATGCCCCCAACTGCAGGAACCGTAGCTTTACACTCTTCCCTTTGCTCCATCCCTTCAGAGAAACCATCTTCTTCTTTAAGATCAACACTTCAAGTGGCTCCCAAACCCAAAAGCGTCCTCCAGAACCACCCACTTTACACCCCAACCAATGCAAAACTCTCCCTTGAATTCAAAGAGAAAATCCTCTGCCTTGAGGTAATGGGTGTTGATGCTGGTAAAGCACTATCCCAAAACCCTGACCTCCGCACAGCTACCATGGAATCCATTCACTCCATTATCTCCTTCCTTCTGTCTAAAGGCCTCCATGAGAAGGACTTGCCCAGGATCTTTGGCATGTGCCCCAAGATTCTCACCTCTGACATCAAAACTGATCTTAGCCCAGTTTTTGATTTCATCTTGCGTGAACTCAAAGTCCCAGAACACAGCTTTAGGAGGGTTGTCAATAAGTGCCCAAGATTGCTTACATCTAGTGTGAAAGACCAGCTTAAGCCAGCTTTGTTTTACTTGAAAAGACTTGGATTTAAGGATATGGGGGCCTTGGCTCATCAAGATTCTGTTCTGCTGGTGTCTAGTATAGAAAGGACCCTCATCCCTAAGCTCAAATTTTTGGAGGATTTGGGGTTTTCCAAGGAACAAGTTAGAAGTATGGTGTTGAGATGTCCAGCATTACTCACTTTCAGCATAGAAAATAATTTTCAGCCAAAGTACGAGTATTTTGCTTCTGAAATGGGGAGAAAACTGGAGGAGCTGAAAGAGTTTCCTCAGTACTTCGCTTTTAGTTTGGAGAACAGGATAAAGCCTAGACATATGGAGGTTGTGCAAAGTGGGGTCCACTTACCTTTGTCAGTGATGCTTAAAAGCACTGATGAGGAATTTAGGGAACTGATAAAGCTGGGGGGTGGATGA 906 0.4437 MPPTAGTVALHSSLCSIPSEKPSSSLRSTLQVAPKPKSVLQNHPLYTPTNAKLSLEFKEKILCLEVMGVDAGKALSQNPDLRTATMESIHSIISFLLSKGLHEKDLPRIFGMCPKILTSDIKTDLSPVFDFILRELKVPEHSFRRVVNKCPRLLTSSVKDQLKPALFYLKRLGFKDMGALAHQDSVLLVSSIERTLIPKLKFLEDLGFSKEQVRSMVLRCPALLTFSIENNFQPKYEYFASEMGRKLEELKEFPQYFAFSLENRIKPRHMEVVQSGVHLPLSVMLKSTDEEFRELIKLGGG* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2532 301 PANTHER CGI-12 PROTEIN-RELATED 16 297 IPR003690 GO:0003690|GO:0006355
Apr1g2532 301 Pfam mTERF 187 292 IPR003690 GO:0003690|GO:0006355
Apr1g2532 301 Pfam mTERF 64 175 IPR003690 GO:0003690|GO:0006355
Apr1g2532 301 Gene3D Transcription termination factor 3, mitochondrial 132 297 IPR038538 -
Apr1g2532 301 SMART mt_12 178 209 IPR003690 GO:0003690|GO:0006355
Apr1g2532 301 SMART mt_12 107 139 IPR003690 GO:0003690|GO:0006355
Apr1g2532 301 SMART mt_12 144 175 IPR003690 GO:0003690|GO:0006355
Apr1g2532 301 SMART mt_12 214 246 IPR003690 GO:0003690|GO:0006355
Apr1g2532 301 SMART mt_12 72 102 IPR003690 GO:0003690|GO:0006355
Apr1g2532 301 SMART mt_12 247 278 IPR003690 GO:0003690|GO:0006355
Apr1g2532 301 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 16 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2532 Apr-Chr1 34880650 34881787 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Apr1g2532 mTERF 9.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2532 K15032 - gmx:100788221 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2532 1 34880650 34881787 Apr1g2532 1 34880650 34881787 ECH