Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2527 ATGAAGGGTGATGCAATGAAGCAGTCTTTTGATCCTTCGGCTTGGGGTCCTTCCAAGATTCCATCTATAAATATACCTGGGAAATTGGGTCATGGGGCATGGGAGGCTTTGTCTGGATCTGATTCCTACCATGCTTCATCTGATGCTAGCCTCTTTTCTAGCTCATTACCTGTTCTTCCACATGAAAAATTGAACTTAAATGAAACTGCAAATGGCTATCAATCTGTTGATGACATCTCATCTAGCTTTAAAAAGCTCCATCAAGGTGCAGAGGGAAATGGTTCCCTTGAAGATGGTGATACTCGTGCAGTTGGACCCATGCTTCCTGATGATGAGGAGGAGCTTTTAGCTGGCATAATGGATGATTTTGACCTAAGTGGTTTGCCTGGTTCTCTTGAGGACTTGGAAGAGTATGATCTTTTTGGTAGTGGTGGAGGTATGGAACTAGAAACTGATCCACAAGAAAGTCTCACTGTGGGTATGTCTAAGTTAAGCTTCTCTGATAGTACTGTTGGAAATGGTTTGCCCCATTATACTTTTCCTAATGGTGTTGGAACTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTATTCGTTCGAAATATTAACAGTAACGTGGAGGATTCAGAGCTGAGAGCTCTTTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCCTGCAAGCATCGTGGATTTGTAATGATATCCTATTATGACATTCGTGCTGCTCGAACAGCCATGCGTGCATTACAAAACAAACCTCTGCGGCGCAGGAAACTAGACATTCATTTCTCAATACCAAAGGATAATCCATCAGACAAGGATATCAACCAAGGAACATTGGTCGTCTTCAATTTGGATCCATCTGTTTCAAATGAGGACCTCCGTCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCACAAGTTTATTGAGTTTTATGATGTCAGAGCTGCAGAAGCAGCGCTTAAATCATTAAATAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCTAGTCGGCCTGGAGGAGCTCGTCGAAATTTGATGCTCCAGTTAAATCAAGAACTTGACCAAGATGAACCACGGAGTTTCCGATATCCAGGGGGTTCTCCTGTAGCCAACTCTCCTCCAGGTAACTGGTTACAGTTCAACAGCCCTGTTGAGCAGAATTCAATGCAAACTATCAATCACTCTCCTGGTTCTAGGATCATGAGCCCAACAACCGGCAATCAGTTACCTGGATTAGCTTCAATTTTGCAACCACAAGTATCCAACAGTGTGAAGACTGCTGCTATTGGCAATGACATAGGAAGGAGCAGTCATGGAGAGCACTTATTTACCAGTATGAATTCATCCCATGGAGCTACATTTCAGTCGCATTCACTTCCAGAGCCAAAATTCAGCCAATATCGTGGAGCATTGCCCTCATTTGGTCCATCAACATCAAATGGGTCCTCAGTGGAAACCTTGTCTGGGCCACAGTTTCTATGGGGAAGTCCAACCCTATACTCAGAGCAATCCAAACCGTCAGCTTGGCCAAGATCATCTGTGGGGCATCCATTTACGTCTAATGGAAAGAGCCATGCATTCCCATACTCAAGTCAGAATAGTTCCTTTGTCGGTTCATCCCAGCACCATCACAATCAACATGTTGGTTCTGCCCCATCAGGTTTGCCTTTTGAGAGACACTTTGGCTTTCATCCCGAGTCACCTGAAACTTCATTCATGAATAATGTTGGATATGGAGGCATGAGTCTGGGGCACAATGATGGAAATTACATGGTTAATGTGGGTGGAGCTGTCAATACTAGCATCAATATCCCAAGAAATATGCCTGATAACGGTTCGTCAAACTTCAGAATGAGATCTTCTCCTAGGCTTAGCCCTGTCTTCTTGGGCAATGGTCCTTATCCAGGACTGCTACCTACCACCATGGAGGGTTTGACTGATCGCTCTCGGAATAGATGGATAGAGAACAATGGAAGCCAAGTTGATAGCAAGAAGCAATTTCAGCTTGACTTGGATAAGATTAAAAGTGGTGAAGATACAAGGACTACATTAATGATCAAGAATATCCCAAACAAATACACCTCAAAAATGTTATTAGCTGCTATTGATGAAAATCACAGGGGTACTTATGATTTTCTCTATTTGCCAATTGACTTTAAGAATAAATGCAATGTGGGTTATGCATTTATCAACATGCTGTCACCCTCACTTATTATTCCATTCTACGAGACATTCAATGGGAAAAAGTGGGAGAAATTTAATAGTGAAAAAGTTGCCTCATTGGCATATGCTCGAATCCAAGGAAAATCTGCCCTTGTGAGTCACTTCCAAAATTCAAGTTTGATGAATGAGGATAAGCGATGCCGCCCTATTCTCTTCCACTCAGAGGGTTCAGAAGCTGGTGATCAGATCATTCAAGAGCATCTTCCTTCCAACTCCAACAACCTAAACATTCAGGGACTTAGGCCAAGTGAATTACATTCAAGTGATTTCCCTGGTAGTCCTCCAAAGGAAGGCCCTTCTACGAGCTTGGATGCAAAATAG 2601 0.4283 MKGDAMKQSFDPSAWGPSKIPSINIPGKLGHGAWEALSGSDSYHASSDASLFSSSLPVLPHEKLNLNETANGYQSVDDISSSFKKLHQGAEGNGSLEDGDTRAVGPMLPDDEEELLAGIMDDFDLSGLPGSLEDLEEYDLFGSGGGMELETDPQESLTVGMSKLSFSDSTVGNGLPHYTFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDEPRSFRYPGGSPVANSPPGNWLQFNSPVEQNSMQTINHSPGSRIMSPTTGNQLPGLASILQPQVSNSVKTAAIGNDIGRSSHGEHLFTSMNSSHGATFQSHSLPEPKFSQYRGALPSFGPSTSNGSSVETLSGPQFLWGSPTLYSEQSKPSAWPRSSVGHPFTSNGKSHAFPYSSQNSSFVGSSQHHHNQHVGSAPSGLPFERHFGFHPESPETSFMNNVGYGGMSLGHNDGNYMVNVGGAVNTSINIPRNMPDNGSSNFRMRSSPRLSPVFLGNGPYPGLLPTTMEGLTDRSRNRWIENNGSQVDSKKQFQLDLDKIKSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKSALVSHFQNSSLMNEDKRCRPILFHSEGSEAGDQIIQEHLPSNSNNLNIQGLRPSELHSSDFPGSPPKEGPSTSLDAK* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2527 866 CDD RRM1_MEI2_like 198 274 IPR034453 -
Apr1g2527 866 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Apr1g2527 866 PANTHER PROTEIN MEI2-LIKE 2 7 859 - -
Apr1g2527 866 Gene3D - 283 380 IPR012677 -
Apr1g2527 866 MobiDBLite consensus disorder prediction 835 866 - -
Apr1g2527 866 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Apr1g2527 866 MobiDBLite consensus disorder prediction 542 574 - -
Apr1g2527 866 Gene3D - 188 282 IPR012677 -
Apr1g2527 866 SUPERFAMILY RNA-binding domain, RBD 702 786 IPR035979 GO:0003676
Apr1g2527 866 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Apr1g2527 866 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Apr1g2527 866 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Apr1g2527 866 CDD RRM2_MEI2_like 283 353 - -
Apr1g2527 866 CDD RRM3_MEI2_like 703 788 IPR034454 -
Apr1g2527 866 MobiDBLite consensus disorder prediction 542 567 - -
Apr1g2527 866 MobiDBLite consensus disorder prediction 1 22 - -
Apr1g2527 866 Pfam RNA recognition motif 2 700 796 IPR007201 -
Apr1g2527 866 SMART rrm1_1 702 778 IPR000504 GO:0003723
Apr1g2527 866 SMART rrm1_1 285 353 IPR000504 GO:0003723
Apr1g2527 866 SMART rrm1_1 200 268 IPR000504 GO:0003723
Apr1g2527 866 PANTHER RNA RECOGNITION MOTIF-CONTAINING 7 859 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2527 Apr-Chr1 34840258 34847379 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2527 194 362 Eukaryotic Initiation Factors Gene Family AT1G71770 25.389 4.55e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2527 - - gmx:100800877 1590.09