Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2526 ATGAGCCTTGGAAGTAGAGGGAAGCTGAAAGACACGAGTTTCAGCACCTCAGCTGAAAGCAACATGAACACAAACACTGTCATCAAGAGAGACAAGATACTTGCTCGGTACAGTGCAGATGCTGAGATTCTTGCAGAGTTTGAGCAATCTGGTATGTCTGGCAAATCATTTGACTACTCAAAGATGGTTCTTGATCCTCCCAGGTTAGTTTCTGAGGACAAAATGATTGCATATTTGTCAAAAATTCAAAGGGGGGGCTTGGTCCAACCCTTTGGTTGTATGCTTGCAATTGAAGAACCCACTTTTAGAATTATTGGGTATAGTGAGAATTGCTCTTCATTGTTGGGTTTGGAGAGGCAACTTGATTCTAAGCAGTTCATGAGTTTGATTGGAGTTGATGCAACAACCCTTTTCACTCCCCCTTCTGGGGCTTCCCTTGCAAAAGCTGTGGCTTCCAGAGAAATTTCGCTTTTGAACCCCATTTGGGTATATGCAAGGACCACTCAGAAGCCATTTTATGCCATACTTCATAGGATTGATGTTGGAGTTGTGATTGATTTGGAGCCGGCACGGTCAAGTGATCCTGCATTGTCACTTGCTGGGGCAGTTCAGTCACAGAAGCTGGCTGTTAGAGCAATTTCAAGGCTGCAATCTCTTCCTGGGGAAGATATCGGTCTGTTGTGTGACACGGTCGTTGAAGAAGTGCAGAAGCTTACAGGATATGACAGGGTTATGGTTTATAAGTTTCATGAGGATGATCATGGTGAGGTTGTATCTGAGATTAGGAGGTCAGATTTGGAGCCTTACTTGGGTTTGCATTATCCTGCTACAGATGTCCCTCAAGCTTCTCGCTTCTTGTTCAAACAAAACCGGGTCAGGATGATCTGTGATTGCCATGCAAAGCCTGTTAAAGTCATTCAGAGTGAAGAATTACGGCAACCTCTTTGCTTGGTGAACTCAACCCTTAGGTCACCGCATGTTTGTCACACACAGTACATGGCTAACATGGGCTCAATTGCCTCTCTGGTGATGGCAATTATAGTCAATGGAAATGATACAACAAGGCTTTGGGGTTTGCTAGTTTGCCATCACACTTCGCCACGCTATGTGCCTTTCCCGGTCCGCTACGCTTGTGAGTTCCTAATGCAGGCTTTTGGATTGCAGCTTTACATGGAGATTCAGTTAGCATCACAGATGGCAGAGAAAAGAATTCTTAAAACACAAACCTTGCTGTGTGACATGCTCCTGCGTGATGCGCCATTTGGTATTGTGACTCAATCCCCAAGTATCATGGATATTGTGAAGTGTGACGGGGCTGCTTTGTATTATGATGGAAACTCTTGGTTGTTAGGCACAACTCCAACAGAATCACAGGTGAAAGACATTGCAGAATGGCTTCTTAGTAATCATGGGGATTCAACAGGTTTGACTACAGATAGTTTGGCTGATGCTGGTTATCCTGGTGCTGCTTCACTTGGGGATGCGGTTTGTGGCATGGCCACGGCAAGAATCAATTCAAGACATTTCCTGTTCTGGTTCAGGTCTCACACTGCTAAAGAAGTGAAATGGGGAGGGGCCAAGCACCATCCAGAGGATAAGGATGATGGCGGGAAAATGAACCCAAGGTCATCATTTAAAGCTTTTCTTGAAGTAGTCAAAAGCAAAAGTTTGCCTTGGGAAGTGTCAGAAATCAATGCTATTCACTCATTACAGCTAATAATAAGAGATTCATTCCAAGACACACAGAACACTGGTCCAAAGACTTTAAATTATATACAGAAAAATGACACTGCAATAGGAGGGATGGATGAACTCAGTTCAGTAACACTTGAAATGGTGAGATTAATTGAGACAGCAACAGTTCCAATTTTCGGGGTTGATTCAGGTGGCATAATCAATGGATGGAATGAAAAAATTGGTGAATTGACAGGTCTGCAGGCCAGTGAAGCTATGGGAAAATCCCTAGTAAATGAAGTTGTACATGCCGACTCGTGTGAAGCGCTTAAAAATATTCTAACCAGAGCCATGCAAGGTCAGGAGGACAAAAATGTTGAGCTGAAACTGAAAAACTTTGGGCTTCATCAACAAAAAGAAGTTGTATATCTCATGGTTAATGCCTGCACTAGTAGGGACTACACAAATGCTATTGTTGGGGTATGTTTTGTAGGTCAAGACATCACTTATGAGAAAGTGGTTCTAGATAAATTCATTAAGTTGGAAGGTGATTACAAAGCTATTATACAAAGTCTCAATCCATTGATACCACCCATATTTGCTTCTGATGAGAATGCTTGCTGCTCTGAGTGGAATGCAGCCATGGAAAGGTTAACTGGTTGGAATAGAGATGAAGTCATAGGAAAATTGCTTCCCAGTGAAATCTTTGGAAGTTTTTGTCGATTGAAAGGTCAAGATACACTGACTAATTTTATGATTTTACTCTATCGAGGAATAAGCGGTCAAGATTCTGAGAAGTTACCATTTGGATTTTTTGATAGAAATGGAAAATTTATAGAGGCTTATATAACAGCAAACAAGAGGACCGATGCAAGTGGGAATATGATTGGCTGTTTCTGCTTCTTGCAGATTGTATCATCAGATTTGAAGCCACCCTCTGAAGGACACAGGCCTAAAGGCAGGGAAAACATTTCCGAATCAAAGGAGTTGGCTTATATACTACAAGAAATGAAGAATCCTCTAAATGGTATACGATTCACACACAAACTTCTGGAAAATACAACTATCTCAGAGAGCCAGAAACAATTTCTTGACACTAGTGATGCATGTGAAAGGCAAATCATGGCAATTATTGAGGATACAGATTTAGGAAGTATAAATGAAGGCAGCACTTTGCAGCTAAACATGGAAGAATTTGTTCTGGGAAATATTTTAGATGCCATTGTCAGTCAAGTCATGATGTTGATAAGAGGAAAAAATTTGCAGTTGTTTCATGAAATTCCTGATGAAATCAAAACTCTTGCTCTATATGGTGACCAAATTAGGCTTCAGGTGGTTTTGTCTGATTTTTTGCTTAATGTAGTCAGCCACACACCATCTCCAAAGGGCTGGGTAGAAATCAAGATTTCACCTGGTTTAAAGATAATACAGGACGGCAATGAGTTTATCCATCTGAAATTCAGAATGACCCATTCTGGTCAAGGTCTCCCTTCCAATGTTCTTCATGATATGTTTGAAGGAGGGAATCAATGGACTACGCAAGAAGGTCTAGGACTATACATGTCCCGGAAAATCCTCAGTAGGATGAATGGTCATGTCCACTATGTAAGAGAACAAAATAAGTGTTATTTCCTCATTGATCTTGAAATTAGAACAAGAAAAGAAAGGCAAAGAAATTTGCAAGCAGAGGCAAGCATGTTAAATTAG 3381 0.4132 MSLGSRGKLKDTSFSTSAESNMNTNTVIKRDKILARYSADAEILAEFEQSGMSGKSFDYSKMVLDPPRLVSEDKMIAYLSKIQRGGLVQPFGCMLAIEEPTFRIIGYSENCSSLLGLERQLDSKQFMSLIGVDATTLFTPPSGASLAKAVASREISLLNPIWVYARTTQKPFYAILHRIDVGVVIDLEPARSSDPALSLAGAVQSQKLAVRAISRLQSLPGEDIGLLCDTVVEEVQKLTGYDRVMVYKFHEDDHGEVVSEIRRSDLEPYLGLHYPATDVPQASRFLFKQNRVRMICDCHAKPVKVIQSEELRQPLCLVNSTLRSPHVCHTQYMANMGSIASLVMAIIVNGNDTTRLWGLLVCHHTSPRYVPFPVRYACEFLMQAFGLQLYMEIQLASQMAEKRILKTQTLLCDMLLRDAPFGIVTQSPSIMDIVKCDGAALYYDGNSWLLGTTPTESQVKDIAEWLLSNHGDSTGLTTDSLADAGYPGAASLGDAVCGMATARINSRHFLFWFRSHTAKEVKWGGAKHHPEDKDDGGKMNPRSSFKAFLEVVKSKSLPWEVSEINAIHSLQLIIRDSFQDTQNTGPKTLNYIQKNDTAIGGMDELSSVTLEMVRLIETATVPIFGVDSGGIINGWNEKIGELTGLQASEAMGKSLVNEVVHADSCEALKNILTRAMQGQEDKNVELKLKNFGLHQQKEVVYLMVNACTSRDYTNAIVGVCFVGQDITYEKVVLDKFIKLEGDYKAIIQSLNPLIPPIFASDENACCSEWNAAMERLTGWNRDEVIGKLLPSEIFGSFCRLKGQDTLTNFMILLYRGISGQDSEKLPFGFFDRNGKFIEAYITANKRTDASGNMIGCFCFLQIVSSDLKPPSEGHRPKGRENISESKELAYILQEMKNPLNGIRFTHKLLENTTISESQKQFLDTSDACERQIMAIIEDTDLGSINEGSTLQLNMEEFVLGNILDAIVSQVMMLIRGKNLQLFHEIPDEIKTLALYGDQIRLQVVLSDFLLNVVSHTPSPKGWVEIKISPGLKIIQDGNEFIHLKFRMTHSGQGLPSNVLHDMFEGGNQWTTQEGLGLYMSRKILSRMNGHVHYVREQNKCYFLIDLEIRTRKERQRNLQAEASMLN* 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2526 1126 Pfam Phytochrome region 406 581 IPR013515 GO:0006355|GO:0009584
Apr1g2526 1126 Pfam PAS fold 742 861 IPR013767 GO:0006355
Apr1g2526 1126 Pfam PAS fold 611 726 IPR013767 GO:0006355
Apr1g2526 1126 Gene3D PAS domain 755 866 - -
Apr1g2526 1126 Pfam GAF domain 223 393 IPR003018 GO:0005515
Apr1g2526 1126 CDD PAS 619 726 IPR000014 -
Apr1g2526 1126 Gene3D - 398 571 IPR043150 -
Apr1g2526 1126 SMART pas_2 610 677 IPR000014 -
Apr1g2526 1126 SMART pas_2 741 811 IPR000014 -
Apr1g2526 1126 Pfam PAS fold 77 190 IPR013654 GO:0006355
Apr1g2526 1126 Gene3D - 204 554 IPR029016 -
Apr1g2526 1126 SMART HKATPase_4 996 1110 IPR003594 -
Apr1g2526 1126 CDD HisKA 883 938 IPR003661 GO:0000155|GO:0007165
Apr1g2526 1126 TIGRFAM sensory_box: PAS domain S-box protein 615 730 IPR000014 -
Apr1g2526 1126 Gene3D PAS domain 81 326 - -
Apr1g2526 1126 ProSiteProfiles PAS repeat profile. 608 679 IPR000014 -
Apr1g2526 1126 PANTHER TWO-COMPONENT HISTIDINE KINASE 30 1115 - -
Apr1g2526 1126 PANTHER PHYTOCHROME E 30 1115 - -
Apr1g2526 1126 ProSitePatterns Phytochrome chromophore attachment site signature. 323 332 IPR013516 -
Apr1g2526 1126 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 223 383 IPR016132 -
Apr1g2526 1126 SMART gaf_1 223 403 IPR003018 GO:0005515
Apr1g2526 1126 MobiDBLite consensus disorder prediction 1 20 - -
Apr1g2526 1126 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 996 1097 IPR003594 -
Apr1g2526 1126 Gene3D PAS domain 609 730 - -
Apr1g2526 1126 PRINTS Phytochrome signature 138 160 IPR001294 GO:0006355|GO:0009584
Apr1g2526 1126 PRINTS Phytochrome signature 238 257 IPR001294 GO:0006355|GO:0009584
Apr1g2526 1126 PRINTS Phytochrome signature 323 344 IPR001294 GO:0006355|GO:0009584
Apr1g2526 1126 PRINTS Phytochrome signature 423 443 IPR001294 GO:0006355|GO:0009584
Apr1g2526 1126 PRINTS Phytochrome signature 508 527 IPR001294 GO:0006355|GO:0009584
Apr1g2526 1126 PRINTS Phytochrome signature 541 559 IPR001294 GO:0006355|GO:0009584
Apr1g2526 1126 PRINTS Phytochrome signature 611 627 IPR001294 GO:0006355|GO:0009584
Apr1g2526 1126 PRINTS Phytochrome signature 630 645 IPR001294 GO:0006355|GO:0009584
Apr1g2526 1126 PRINTS Phytochrome signature 704 721 IPR001294 GO:0006355|GO:0009584
Apr1g2526 1126 PRINTS Phytochrome signature 724 744 IPR001294 GO:0006355|GO:0009584
Apr1g2526 1126 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 194 IPR035965 -
Apr1g2526 1126 ProSiteProfiles PAS repeat profile. 742 787 IPR000014 -
Apr1g2526 1126 CDD PAS 753 861 IPR000014 -
Apr1g2526 1126 SUPERFAMILY PYP-like sensor domain (PAS domain) 614 722 IPR035965 -
Apr1g2526 1126 SMART HisKA_10 883 947 IPR003661 GO:0000155|GO:0007165
Apr1g2526 1126 PIRSF Phytochrome_conventional 9 1117 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Apr1g2526 1126 SUPERFAMILY GAF domain-like 401 580 - -
Apr1g2526 1126 CDD HATPase_Phy-like 995 1108 IPR044767 -
Apr1g2526 1126 ProSiteProfiles Histidine kinase domain profile. 890 1110 IPR005467 -
Apr1g2526 1126 Gene3D - 927 1102 IPR036890 -
Apr1g2526 1126 Pfam His Kinase A (phospho-acceptor) domain 885 947 IPR003661 GO:0000155|GO:0007165
Apr1g2526 1126 SUPERFAMILY GAF domain-like 203 389 - -
Apr1g2526 1126 SUPERFAMILY PYP-like sensor domain (PAS domain) 756 858 IPR035965 -
Apr1g2526 1126 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 950 1107 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2526 Apr-Chr1 34829355 34835283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2526 15 1110 Histidine Kinase Gene Family AT4G18130 64.137 0.0 1486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2526 K12123 - gmx:100808192 2033.07