Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2524 ATGGGTCGTCCAAAATTAACCTTAAAATTCATCTCAAATGGGAGAGAGCGTGAAGTAAGATTCATGAACCGAAAGAAGAGACTATTGAACAACATGTCTGAATTTTGTACCAAATGTGGTGTCAATGGTTGCTTGATTATCTATGGTGGCGATGGTGATGCTCAACCAGTGACTTGGCCTGAAGACCCTATTGCGGTGCATTCCATCATTGAAAAGTATGAGCGTACAAAGAATGAGAAGTTTCCTAAGAATTTTGATCTCAAAGACTTCTTCAAGAATAGGAAGAATACAATTAAAATTGAGATTTCCAAAGTTCAGAAAGAGATTTTCAACATCAAATATCCAACTTGGCATGCAAGTTTCGATGGCCTTGATGAAGAGAAGCTGTGGAATTTCATTGCTCTTTTGGACGACAAACTAGAAGCCTGTAATCAAAGAATTATCATGTTGAGGCACAACCATCAAATTGAAGCCAACTTCAATTTCTTGCAGAATATGGTTCAATTTACAAGTGCTGCCACAAGCTCAAGCCAACTCAATTGCATGCAAACCATCTCTCTGAACCAACATATCTTTGCTCCTATGAATCCACTTAATGACATCAACCTGCTAGCATCTTACCAACTTAATCTCGACAGGGGTTCTAGTTCTCAATCCCAAATGCTTAATTTTGATCCTAGTTTTATGCAGTTGATGGCAAAGAATAATGGGGTGGTGGATGATAATTGTGCTAACCAGATTGGTGCTTTGGAAAATTTTACAAATCAATCAAATGTGGTTGTGGATTTGAGTACAAGTCATCTTGGTGATCCTTTAGATTGCTCCAATCAGCTTGGTGAAATTGAAGATTGGACTAATAACTACGGTAAGGTTTTTGATTGGCCTACTCAATTTGGTGAGACTATAAATTGGACTAATCAGCACTGTGTGTCTATGATTGGGAGCACTTCATATATGAATGATGCTTCTAATTTTGGTACAACTATTCATGAGTTAGAAAATGAAGGCCATGAAGATAACCTAGAGTCTTCACTTTGCAATTACTGTGGAAATTGTGGTTTAGAAAATTCTACAAATCAACCTAATGTGCCAGTAGATTTGATGAGTCAACTTGGTGGGTCTATGGATTGCTTTACTCAATTTAGTGGATTTGGTAAGTCAACTTAA 1167 0.3736 MGRPKLTLKFISNGREREVRFMNRKKRLLNNMSEFCTKCGVNGCLIIYGGDGDAQPVTWPEDPIAVHSIIEKYERTKNEKFPKNFDLKDFFKNRKNTIKIEISKVQKEIFNIKYPTWHASFDGLDEEKLWNFIALLDDKLEACNQRIIMLRHNHQIEANFNFLQNMVQFTSAATSSSQLNCMQTISLNQHIFAPMNPLNDINLLASYQLNLDRGSSSQSQMLNFDPSFMQLMAKNNGVVDDNCANQIGALENFTNQSNVVVDLSTSHLGDPLDCSNQLGEIEDWTNNYGKVFDWPTQFGETINWTNQHCVSMIGSTSYMNDASNFGTTIHELENEGHEDNLESSLCNYCGNCGLENSTNQPNVPVDLMSQLGGSMDCFTQFSGFGKST* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2524 388 Gene3D - 14 98 IPR036879 GO:0003677|GO:0046983
Apr1g2524 388 PANTHER PROTEIN, PUTATIVE-RELATED 5 254 - -
Apr1g2524 388 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Apr1g2524 388 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Apr1g2524 388 PANTHER MADS BOX PROTEIN 5 254 - -
Apr1g2524 388 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr1g2524 388 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2524 Apr-Chr1 34804825 34805991 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2524 1 146 Type I MADS-box Gene Family AT5G55690 30.464 3.48e-16 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr1g2524 SRF-TF 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2524 - - aprc:113852359 809.29