Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2509 ATGGATTCTTGGGCTACAGTATCTGTTCTTACTAATCGATTTATTCCATGTTCTGCCACAATTACTGAATTTTCCATGGACCCCAAATTGAGGGGCAGTTTCTATAAGATATACAGATATACAAACAAAGGAAAATTCAGTCTCTCTTTTGCTAGGGATGATTATAAAGTTAGGAGTAATTGTGCAATTAAATCAATCCAAGATGTATCTTATTTTCAAACCCAACCACCACAAGGAACTTGGGAAGAGCCAGATACTGGGAGTGACAGTGAGTGTGATGATGAAGAAGATGAGGAATTTGAGGATATGAACCGAGGATTTGAAAGTGATCCAGATGAGGAAGGGACACAAACTTCAGCTATTACTGATGTTAATATAACTTCAGTGGACAACTATGAAGAACTTATTAAGAAAGAGGTTGAGCAACTTTTGGAACCAGAAGAAAGAGCAATACTGCAACAGAATGTTACTCCTAACTTGGAAAAAATATCAACTGCAAAATGGAGCCCACTGCACACTCTTGTGCTGTCAATGCAGATAAGTTGTGTGGATAAGCTTCTTGAAAATGGTGTTGATATTGATTTGCCTGATAAGGAAGGTCTCACTGCACTTCATAAGGCAATTATAGGAAAAAAAGAAGCTGTGATAAGCCATCTTTTACGTAAAGGTGCAAGTCCTCATGTTAAGGATAAGGATGGAGCTACTCCACTTCATTACGCAGTTCAAGTTGGTGCCAAGATAACTGTGAAATTATTGATCAAGTATAAGGCTGACATCAATGTTGCAGATAATGAAGGTTGGACCCCATTGCACATTGCCATTCAAAGCAGAAATAGGGATATAGCAAAAATTTTGTTAGTCAATGGTGCTGATAAGACAAGAATAAATAAGGACGGAAAAACAGCTCTGGATCTAGCCTTATGTTATGGGAAAGACTTCAAGTCTTATGACCTTGCTAAGTTACTGAAGACGGTTCCAGCTACCTGTGATCTATGA 996 0.3815 MDSWATVSVLTNRFIPCSATITEFSMDPKLRGSFYKIYRYTNKGKFSLSFARDDYKVRSNCAIKSIQDVSYFQTQPPQGTWEEPDTGSDSECDDEEDEEFEDMNRGFESDPDEEGTQTSAITDVNITSVDNYEELIKKEVEQLLEPEERAILQQNVTPNLEKISTAKWSPLHTLVLSMQISCVDKLLENGVDIDLPDKEGLTALHKAIIGKKEAVISHLLRKGASPHVKDKDGATPLHYAVQVGAKITVKLLIKYKADINVADNEGWTPLHIAIQSRNRDIAKILLVNGADKTRINKDGKTALDLALCYGKDFKSYDLAKLLKTVPATCDL* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2509 331 SMART ANK_2a 199 228 IPR002110 GO:0005515
Apr1g2509 331 SMART ANK_2a 166 195 IPR002110 GO:0005515
Apr1g2509 331 SMART ANK_2a 265 294 IPR002110 GO:0005515
Apr1g2509 331 SMART ANK_2a 298 331 IPR002110 GO:0005515
Apr1g2509 331 SMART ANK_2a 232 261 IPR002110 GO:0005515
Apr1g2509 331 ProSiteProfiles Ankyrin repeat region circular profile. 232 264 - -
Apr1g2509 331 SUPERFAMILY Ankyrin repeat 158 322 IPR036770 -
Apr1g2509 331 PANTHER ANKYRIN REPEAT AND SOCS BOX PROTEIN 3 77 325 - -
Apr1g2509 331 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 77 325 - -
Apr1g2509 331 ProSiteProfiles Ankyrin repeat region circular profile. 265 291 - -
Apr1g2509 331 MobiDBLite consensus disorder prediction 86 108 - -
Apr1g2509 331 ProSiteProfiles Ankyrin repeat profile. 232 264 IPR002110 GO:0005515
Apr1g2509 331 ProSiteProfiles Ankyrin repeat profile. 199 231 IPR002110 GO:0005515
Apr1g2509 331 ProSiteProfiles Ankyrin repeat region circular profile. 199 231 - -
Apr1g2509 331 MobiDBLite consensus disorder prediction 73 117 - -
Apr1g2509 331 Pfam Ankyrin repeats (3 copies) 214 294 IPR002110 GO:0005515
Apr1g2509 331 Gene3D - 237 324 IPR036770 -
Apr1g2509 331 ProSiteProfiles Ankyrin repeat profile. 265 297 IPR002110 GO:0005515
Apr1g2509 331 ProSiteProfiles Ankyrin repeat profile. 166 198 IPR002110 GO:0005515
Apr1g2509 331 Gene3D - 130 236 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2509 151 306 Ion Channels AT2G25600 30.769 8.69e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2509 - - gmx:100808064 509.22