Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2494 ATGGAGCAGTTGAAATTGGCTGCAGATTCTGACGCCAAAGAGGCTTATCCTTGTAAGCACAAGACAAAAAATAACAATGCACTTGAGTCTTCTGACAGTCTGAGAAATAGAAAGATATCAGCTCGATGGGATCCAGTTGAAGCATGTCGGCCAAGAATTGAAGAAGCACCTGTGTTTTATCCGACTATTGAAGAATTTGAAGACACACTCAGTTACATAGCAAAGATACGACCCCTAGCTGAAGCCCATGGCATATGTAGGATTGTCCCTCCAGCTTCCTGGGCTCCGCCCTGTCCTCTTAAGGAGAAAGAACTATGGGAAAATGCTGAATTTCCTACCCGTATTCAGCAAATAGATTTGCTTCAAAATAGGGAACCCATGAGGAAAAAAAGTAGGGGAAGGAAACGAAAACGTAGAAAGCACTCCAAAACAGGCACATGTAGGAGGCCTGCCAATGCAACTTCTGAATCTGAAGAGAAATTTGGATTTCAATCAGGGTCGGACTTCACACTTAAAGACTTTCAGCAATATGCTAATTTTTTTAAGGAATGCTACTTTGGGTTGAGAGATGCCAATGGAGACAGGAAAGTTAGTGACAGTAACTATCAGATGAAATGGGAGCCATCTGAAGAGGAAATTGAAGGTGAATACTGGCGAATAATTGAGCAACCAACTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAGACTGGAGCACTTGGAAGTGGTTTTCCTAAGGCATCATCCCTCATTAATGGTGATTCAGATCAATATGCCCTGTCTGGTTGGAATCTGAATAACTTTCCCCGACTGCCAGGTTCTGTACTTAGTTTTGAAGGAAGTGATATATCAGGAGTTTTGGTGCCATGGCTGTATGTTGGCATGTGTTTTTCGTCATTCTGCTGGCATGTTGAGGACCATCACCTCTATTCACTTAACTATTTGCACTGGGGTGACCCAAAAGTATGGTATGGAGTACCTGGAAGCCATGCTTCAGCACTTGAAAATGCAATGAGGAAGCACTTGCCTGATTTATTTGAGGAACAGCCAAATCTATTAAATGAACTGGTTACTCAGTTATCTCCTTCAATTCTTAAAGCTGAGGGAGTGCCTGTGTATCGCACTGTTCAGCATTCTGGGGAATTTGTTATTACCTTTCCAAGGGCATACCATTCTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCAGTTAATGTGGCTCCTGTTGATTGGTTAATGCATGGCCAGAATGCTGTTGAGCTTTACAGCTTACAACGTCGTAAGACATCATTGTCACATGACAAGCTCTTATTTGGATCAGCACTGGAAGCTGTACGAGCCCTTGCAGAGCTAGCCCTTGGGAAGGAAACTCCAAAAAATTTGAAATGGAGGAGTGTCTGTGGAAAAGATGGAGATCTTACCAAGGCGATTAAGGCAAGGATAAAGATGGAAGAAGAGAGGCTAGACTGTCTTCCAAGTCATCTTAAGTTGCTGAAGATGAACAGTGACTTTGATTTGTACAAGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCTGCTGTTGGTTGTGAGTGCTCTCTTGACAGATACTCTTGTCTTAAGCATGCCAATTTGTTCTGCTCCTGTGGAATGGACAAAAGATTTGTTCTACTTCGATATACTATGAATGAGCTAAAAAATTTGCTTGAAGCATTAGAAGGAGAATCACCTGCTATTGAGATGTGGGCAAATAAAAAATTTGAAATGGTTTCCACTGATGCTAATGAGGTTTACGTTGATAAACCAGCTGCTGAGCAAGACACATACAAAATCAAGAGTCGTGAAGAAAAGGAAAGCTCAACTGGCTGTGCAAGAACCAAGGATAGGTCAAATCTAAATGCACCTAGCAGCAGTCCTAATAGTCATATTACTTCCGAGATAGTGCAGTCTGAATCTCACCTCATAAGTGCTTCATATGACAGTATAGATAGTCATTGTGACAATAATAATGATAAGAAATTGGTCAAAGACAACAAAGATAAAATGGAACGGGCAGGTTCTCTAGATTTGAATTTTGATAAATCTGGTGAAAATGAAAATTGTTTGCTGCATATTGCTGAGAACCATCATAACAAAGGTCCTTCAGTAGAGGAAAAAGTATGCTGTTCAGAGGCCAGAAAGGAAGACAACATGGAAATTGGTGGTGAGGCTAACCTATCAAACTCGTTTTCTGTTCTAAAGACAGATTTTTCATCATCATGTTCAAGGGATGTTTGCAATTATTATACGTCTGAATATGGAAAAATTGAGGTGGATCTGCACATGGATAGAGATTCAGGAAAACAACACAACAATCTATTTAAAAAAGAAGCCATAGACACCAAAGATACAAGCATACCTTTGAAAGCTGAAAGCTGTTTAATGCAAATGTTTGGTACTTCTGTCCAGCCTATAAGTTTGGGATCTGTTGTTAATGGAAAGCTTTGGTGCAGTAATCACACAATATATCCAAAAGGATTTAAGAGTCGAGTCAATTTCTTTAGCGTTCTTGATCCAACAAAAATCTGTAGCTATATTTCTGAAGTCATTGATGCTGGATTTCTGGGACCTCTTTTCAAGGTTACCATGGAAGAATGTCCAAGTGAGGCTTTCACAGACACCTCAGCAGATAAATGCTGGGAATCAGTTCTGAAAAGAATACATCATGAAATCAGGAAGCAAAGGAGTGTAGGTGAACTAGAAATTCCTTCCTTAGAGCTTCTGAAAAGCATAAACGGTCATAGAATGTTTGGCTTCCTTTTACCATCTACTGTTCAGGCTATTGAAGCTCAAGATCCCAGTCATCTGTGTGTAGAGTACTGGAATCACAAAGTTGTCCCTACATCTTCCGGGAGTGTCATTGATAAGTCCACATATGGTTCGAGTAGCTCTCTAGGTAATATCAACACCAAAATTTTTGGTATCAATTTGATTAAGCAAGAAAAGGACAACAGAAGAGGAAGTTGCCATTCCCTTGAAGAGATGAAACCAATACTACAAAGGGCAAGTCCTGTTGAGTTAAGCACGATGCATAAGTTACTCAGCTCTGATAAACAGTGCTCTCAGTGGAAAGTGGCCTTGATGGCATTGATGGATGAGATCAAGAAAGCTTGTCAATAA 3150 0.406 MEQLKLAADSDAKEAYPCKHKTKNNNALESSDSLRNRKISARWDPVEACRPRIEEAPVFYPTIEEFEDTLSYIAKIRPLAEAHGICRIVPPASWAPPCPLKEKELWENAEFPTRIQQIDLLQNREPMRKKSRGRKRKRRKHSKTGTCRRPANATSESEEKFGFQSGSDFTLKDFQQYANFFKECYFGLRDANGDRKVSDSNYQMKWEPSEEEIEGEYWRIIEQPTDEVEVYYGADLETGALGSGFPKASSLINGDSDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASALENAMRKHLPDLFEEQPNLLNELVTQLSPSILKAEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWLMHGQNAVELYSLQRRKTSLSHDKLLFGSALEAVRALAELALGKETPKNLKWRSVCGKDGDLTKAIKARIKMEEERLDCLPSHLKLLKMNSDFDLYKERECFSCFYDLHLSAVGCECSLDRYSCLKHANLFCSCGMDKRFVLLRYTMNELKNLLEALEGESPAIEMWANKKFEMVSTDANEVYVDKPAAEQDTYKIKSREEKESSTGCARTKDRSNLNAPSSSPNSHITSEIVQSESHLISASYDSIDSHCDNNNDKKLVKDNKDKMERAGSLDLNFDKSGENENCLLHIAENHHNKGPSVEEKVCCSEARKEDNMEIGGEANLSNSFSVLKTDFSSSCSRDVCNYYTSEYGKIEVDLHMDRDSGKQHNNLFKKEAIDTKDTSIPLKAESCLMQMFGTSVQPISLGSVVNGKLWCSNHTIYPKGFKSRVNFFSVLDPTKICSYISEVIDAGFLGPLFKVTMEECPSEAFTDTSADKCWESVLKRIHHEIRKQRSVGELEIPSLELLKSINGHRMFGFLLPSTVQAIEAQDPSHLCVEYWNHKVVPTSSGSVIDKSTYGSSSSLGNINTKIFGINLIKQEKDNRRGSCHSLEEMKPILQRASPVELSTMHKLLSSDKQCSQWKVALMALMDEIKKACQ* 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2494 1049 Pfam F/Y rich C-terminus 866 953 IPR003889 GO:0005634
Apr1g2494 1049 ProSiteProfiles FYR domain FYRC motif profile. 864 954 IPR003889 GO:0005634
Apr1g2494 1049 SMART fyrc_3 868 975 IPR003889 GO:0005634
Apr1g2494 1049 SMART fyrn_3 818 862 IPR003888 GO:0005634
Apr1g2494 1049 MobiDBLite consensus disorder prediction 1 20 - -
Apr1g2494 1049 Pfam jmjN domain 57 90 IPR003349 -
Apr1g2494 1049 Pfam JmjC domain, hydroxylase 291 407 IPR003347 -
Apr1g2494 1049 SMART JmjN_1 55 96 IPR003349 -
Apr1g2494 1049 ProSiteProfiles FYR domain FYRN motif profile. 804 862 IPR003888 GO:0005634
Apr1g2494 1049 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 11 1048 - -
Apr1g2494 1049 MobiDBLite consensus disorder prediction 608 641 - -
Apr1g2494 1049 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Apr1g2494 1049 PANTHER LYSINE-SPECIFIC DEMETHYLASE 11 1048 - -
Apr1g2494 1049 Pfam F/Y-rich N-terminus 815 859 IPR003888 GO:0005634
Apr1g2494 1049 Gene3D Cupin 41 408 - -
Apr1g2494 1049 SUPERFAMILY Clavaminate synthase-like 259 444 - -
Apr1g2494 1049 Gene3D - 808 948 - -
Apr1g2494 1049 SMART cupin_9 258 424 IPR003347 -
Apr1g2494 1049 Pfam C5HC2 zinc finger 513 565 IPR004198 -
Apr1g2494 1049 MobiDBLite consensus disorder prediction 622 641 - -
Apr1g2494 1049 MobiDBLite consensus disorder prediction 121 159 - -
Apr1g2494 1049 MobiDBLite consensus disorder prediction 1 32 - -
Apr1g2494 1049 ProSiteProfiles JmjC domain profile. 258 424 IPR003347 -
Apr1g2494 1049 MobiDBLite consensus disorder prediction 128 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2494 Apr-Chr1 34524226 34533685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2494 64 1045 JUMONJI Transcription Factor Family AT4G20400 46.154 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Apr1g2494 JmjC 4.9e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2494 - - gmx:100801775 1723.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2494 1 34524226 34533685 Apr1g2494 1 34524226 34533685 ECH