Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2483 ATGGAGGCTCAATTTGAGGGAAAAAATCAGTATTTGTATGGACTTGTGGTGCCAGAGATGAAGGGTGTTGGGAAGAGAAGTTTGGAATGGGATTTGAACGATTGGAAATGGGATGGAGATCTTTTTACTGCTAGGCAACTGAATTCAGTGCCATCAGATTGTAGGAGTCGTCAATTGTTTCCTACTGATCCTGAAATTCTTTCAAATGTTGATACTTCTAACAATTTGTCTTCTGGATATGATGATATCAACCATGGGGAAGGAAAGAGAGAATTGGAGAAAAGGAGGAGAGGCGTTGTTGATGAAGGGGTGGAGATGAATGATGAAGCTGGTTCTCTTAATTTGAACCTCGGAGGTCAAGTATACCCTATCATGGAAGGGGAGGAAAAGAGTGGGAAGAAGACAAAGATAACTGGGACTACTTCGAGCCGTGCTGTTTGTCAAGTGGAAGATTGTCGAGCTGATCTTAGTAATGCAAAGGATTACCATCGTCGCCACAAAGTTTGTGATATGCATTCTAAGGCTACCAAGGCACTAGTTGGGAATGTTATGCAGAGATTCTGCCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGCCGTAGGCGTCTGGCTGGCCATAATAAGAGGAGGAGGAAAACACATCCTGATTCTACTGTAGTTAGTGGTGGATCTCAGAATGAAGAAAAGGGCAGTAGCTATCTGTTAATGAGTCTGCTAAGGATACTGTCCAATATGCATTGTGAGTTTGTAAACCAAGATGTTCTATCTCATCTGCTGAGGAACCTTGCAAGTCTGGCTGGTACAACAAATGGAAGAAATATAGCATCTTTATTAGAGGGATCTCAAGATTTGGTAAAAGCTGGGACATCTGGAGCTGCACAGGATGTTCCAAACACAAATTCAAATGGTGCTGAACCATCCAGACCTTGTGGTTCTTCTATCAAGATCAATGATGGTCTAATCCGTCAGGACCCTCCAGAGTCTAGGTTACAATGTGAGACAATTCCTGCTAATGATATGGCTCAAAAATGTATAGCTTCAGGCAGTGGTGGAGTAGGACGTTTAAAATCTCCTCCAGGACCACAGTCCTCAAATTTACTTCTTTCAAGGGACAGTCTTCCACCCCATTCAGTTGCAGCAGAGACTACAGTTGGAAGAATTGGGTTAAGTAATATTGACCTAAACAATGTATATGATGATGTACAGGATTATGCTGAGTACCCCATGAATTCTCGTCCTCCAGTGCCTTTAGGGATCGAGTCTCTTGATAATCCCTTACAGGTCCAATGTGACTCTCTCAAGTCAAGTCCACCACAGACAAGTAGAAACTCTGATTCAACCTCTACCCAGTCGCCATCTAGTTCGAGTGGAGAAGCTCAGAGTCGCACTGATCGAATTGTTTTCAAACTATTTGGCAAGGCTCCAAATGATTTCCCCCTTGCTCTCCGATCTCAGGTCCTTAACTGGTTATCCCACAGTCCCACTGAGATAGAGAGCTATATAAGACCAGGCTGTATCATATTAACCATATATCTCCGTCTGGAAAATTCTGCATGGGAGGAGCTATGCTGTAATCTAGGATCCAGCTTGAGAAAGCTTGCCTCATCAAATGATTCTTTTTGGAGAACAGGATGGGTATATACAAGAGTGCGGCACTCTGTAGCTTTTCTTTATAATGGTCAGGTGGTCTTAGATGTGCCATTGCGCCTCAAAAGCCCACAGAGTAGTAAGATTTTGTGCATTAAACCGCTTGCTGTCTCTCAAACTGCTAGTGTTCAATTTATTGTGAAAGGATTCAACCTTTTCCAGTCTAACACAAGGTTGCTTTGTTCACTTGAAGGGAAATATCTGGTACAAGATAGTTGTTATAATCTGATTGATGGAACAAATACAGCCATTGAACATCATGAACTTCAACGTCTCAGTTTCTCTTGTCATATACCGAATGTGACTGGAAGAGGGTTTATTGAGGTGGAAGATAATGGACTTAGCGGCTGTTCCTTTCCATTTATTGTAGCAGAGCAAGAAATTTGTTCAGAGATTTGTAAGCTGGAGAGTGTCATTGAGGCAGCGGAGACTGCTGATGACATCCAGATAAAAACCAAACTAATGGAAGAGAAGACTCGAGCATTGTATTTCATACAAGAAATGGGTTGGCTCCTTCATAGAAGTCGTGTAAAAGTTAGGCTAGGTCCCATGGCACCTGGCCAAGAATGCTTCCATTTTAATCGGTTCACGTGGCTTGTTGGATTCTCTATGGACCATGATTGGTGTGCTGTGATGAAAAAACTCTTGGACATCATCTTTGAGGGTGCTGTTGATACAGGAGAGCATACCTCTGCTGAGCTTGCATTGTTGGACATGGGTCTTCTGCATAGAGCTGTAAAGAGAAATTGCAGGCCCATGGTGGAACTATTGTTAAAATTTGTGCCAAAGCAAGTCAACAAGTCCCCTGACAGGTTCTTATTTAGACCTGATATTGTTGGGCCTGCTGGGTTGACTCCCCTTCATATTGCAGCAAGTATGCATGGCTCGGAGAATGTATTGGAAGCATTAACAGATGATCCAGGAATGGTAGGAACTGAGGCATGGAAAAGTGCTCGTGACACTACAGGTTTGACTCCCAACGACTATGCATCGCTGCGGGGCTACTACTCCTACATTCAACTTGTCCAGAGGAAAACAAGCAAGAAATGCGAAAGTGAACACGTGCTTGACATCCCAGGCACCCTTGTAGATAGTAACATAAAGCAGAAACAGTTAGATGGGCATAGATCATCAAAAGTCTCTAGTTTGCAGACTGAGAAAATTGAAATAACATCAATGCCACATCAGTGTGGGCTATGCCAGCGCAAGCTGGCGTATGGTGGCACGAGAAGGGCACTGGTTTATAGGCCAGCAATGCTGTCAATGGTGGCCATTGCAGCTGTGTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCCAAAGTTTATTATGTTTTCCAACCTTTCAGCTGGGAATCATTGGAGTATGGATCAATCTAG 3051 0.4326 MEAQFEGKNQYLYGLVVPEMKGVGKRSLEWDLNDWKWDGDLFTARQLNSVPSDCRSRQLFPTDPEILSNVDTSNNLSSGYDDINHGEGKRELEKRRRGVVDEGVEMNDEAGSLNLNLGGQVYPIMEGEEKSGKKTKITGTTSSRAVCQVEDCRADLSNAKDYHRRHKVCDMHSKATKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDSTVVSGGSQNEEKGSSYLLMSLLRILSNMHCEFVNQDVLSHLLRNLASLAGTTNGRNIASLLEGSQDLVKAGTSGAAQDVPNTNSNGAEPSRPCGSSIKINDGLIRQDPPESRLQCETIPANDMAQKCIASGSGGVGRLKSPPGPQSSNLLLSRDSLPPHSVAAETTVGRIGLSNIDLNNVYDDVQDYAEYPMNSRPPVPLGIESLDNPLQVQCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKAPNDFPLALRSQVLNWLSHSPTEIESYIRPGCIILTIYLRLENSAWEELCCNLGSSLRKLASSNDSFWRTGWVYTRVRHSVAFLYNGQVVLDVPLRLKSPQSSKILCIKPLAVSQTASVQFIVKGFNLFQSNTRLLCSLEGKYLVQDSCYNLIDGTNTAIEHHELQRLSFSCHIPNVTGRGFIEVEDNGLSGCSFPFIVAEQEICSEICKLESVIEAAETADDIQIKTKLMEEKTRALYFIQEMGWLLHRSRVKVRLGPMAPGQECFHFNRFTWLVGFSMDHDWCAVMKKLLDIIFEGAVDTGEHTSAELALLDMGLLHRAVKRNCRPMVELLLKFVPKQVNKSPDRFLFRPDIVGPAGLTPLHIAASMHGSENVLEALTDDPGMVGTEAWKSARDTTGLTPNDYASLRGYYSYIQLVQRKTSKKCESEHVLDIPGTLVDSNIKQKQLDGHRSSKVSSLQTEKIEITSMPHQCGLCQRKLAYGGTRRALVYRPAMLSMVAIAAVCVCVALLFKSSPKVYYVFQPFSWESLEYGSI* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2483 1016 SUPERFAMILY SBT domain 145 226 IPR036893 GO:0003677|GO:0005634
Apr1g2483 1016 Pfam SBP domain 147 220 IPR004333 GO:0003677
Apr1g2483 1016 Pfam Ankyrin repeats (many copies) 796 860 IPR002110 GO:0005515
Apr1g2483 1016 MobiDBLite consensus disorder prediction 211 235 - -
Apr1g2483 1016 Gene3D - 767 915 IPR036770 -
Apr1g2483 1016 MobiDBLite consensus disorder prediction 357 380 - -
Apr1g2483 1016 SUPERFAMILY Ankyrin repeat 797 899 IPR036770 -
Apr1g2483 1016 Gene3D - 138 208 IPR036893 GO:0003677|GO:0005634
Apr1g2483 1016 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 13 1015 - -
Apr1g2483 1016 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 1015 IPR044817 GO:0003677
Apr1g2483 1016 MobiDBLite consensus disorder prediction 437 469 - -
Apr1g2483 1016 MobiDBLite consensus disorder prediction 65 81 - -
Apr1g2483 1016 MobiDBLite consensus disorder prediction 65 96 - -
Apr1g2483 1016 ProSiteProfiles Zinc finger SBP-type profile. 144 221 IPR004333 GO:0003677
Apr1g2483 1016 MobiDBLite consensus disorder prediction 296 322 - -
Apr1g2483 1016 MobiDBLite consensus disorder prediction 300 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2483 Apr-Chr1 34437856 34446300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2483 1 1015 SBP-box Gene Family AT3G60030 48.412 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Apr1g2483 SBP 5.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2483 - - gmx:100776125 1690.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2483 1 34437856 34446300 Apr1g2483 1 34437856 34446300 ECH
Apr9g2365 9 31254268 31261580 Apr1g2483 1 34437856 34446300 PCT