Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2482 ATGGCGTCTGATCTGAATTCCGGGTTGTCCAAGAAAACATTTGTTTTTGGATTGAAAGTGTGGGTATTAATGGGAATATTAGTTGGCTTATTCATCATCATAATTCTTGTGGTGCTATCAATATGTCTTACTTTAAGAAAGAAGTCCAGAAGAGTCAATGGCAAACTTCCCCTTTGCCATGTGTTATCTGTTTCGGAAGATATCAAAGAAATAAAAGTTGATCAAGTTTCAGCAAATAATCATCCACAGAATGGTGCTTTTATGAGTCTGAATGACAAATTTGGTGACAGGGAGTCTGAAAAAGTTTTGGTCCAAACAAAGAATGGGGATAATAGCAGTCTATCAGGCTCATTTACTCATTTAGAGAAAGACGCTAATGGCTCTCAATCAGGTGAAGAAAGTGGTGTTAAGAGCTTTTCTGCTTACAGGTCTTCTTCACATCCTATAACTGCACCATCCCCTTTGTCTGGTCTGCCTGAATTCTCTCACCTTGGCTGGGGACACTGGTTTACATTAAGGGACCTAGAACTTGCAACAAACAGGTTTTCAAAAGACAATGTTATTGGTGAGGGTGGATATGGAATTGTTTATCAAGGTCAACTAATCAATGGGAGTCCTGTGGCTATTAAAAAGCTCCTCAATAATTTAGGACAAGCTGAAAAGGAATTCAGGGTGGAGGTTGAGGCTATTGGGCATGTACGGCATAAGAATTTGGTTCGACTTTTGGGCTATTGCATTGAAGGAACTCACAGGTTATTGGTTTATGAGTATGTTAACAACGGCAATTTGGAGCAGTGGCTTCATGGAGCCATGCGGCAGCATGGCTTTCTTACTTGGGATGCTCGGATAAAAATTCTCCTTGGAACAGCCAAAGCGCTGGCTTACTTGCATGAAGCAATTGAGCCAAAAGTTGTGCATCGAGATATTAAGTCCAGCAATATTCTAATTGATGATGAATTTAATGCAAAGATATCTGATTTTGGGCTGGCTAAGTTACTGGGTGCTGGAAAAAGTCATATTACGACTAGAGTTATGGGTACTTTTGGATATGTAGCTCCAGAATATGCCAACTCTGGCTTGCTAAACGAGAAGAGCGATGTTTACAGCTTTGGGGTATTGCTCCTTGAAGCAATTACAGGAAGAGACCCAGTAGATTATGGCCGACCAGCAGCTGAGGTAAATTTGGTTGACTGGCTCAAGATGATGGTAGGGTGTCGGCGCTCAGAAGAGGTGGTAGACCCCAACATTGAGACTAGGCCATCAACAAGTGCCCTGAAGCGAGCCCTCTTAACTGCTCTTAGGTGTGTTGATCCAGATGCTGAAAAAAGACCAAGGATGAGCCAAGTTGTCCGCATGCTTGAATCAGAGGAATATCCTATACCTCGAGAGGATCGAAGACGCCGAAGGAGTCAGGCCGGAAACATAGAGCTAGAGACCCAGAGGGAGGCTTCTGATACAGATAAGAGTGACAATCCAGATTCTAAGCCGAATGGCAGGAGCCAACTTGTGCAGTGA 1515 0.4284 MASDLNSGLSKKTFVFGLKVWVLMGILVGLFIIIILVVLSICLTLRKKSRRVNGKLPLCHVLSVSEDIKEIKVDQVSANNHPQNGAFMSLNDKFGDRESEKVLVQTKNGDNSSLSGSFTHLEKDANGSQSGEESGVKSFSAYRSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKDNVIGEGGYGIVYQGQLINGSPVAIKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQHGFLTWDARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYGRPAAEVNLVDWLKMMVGCRRSEEVVDPNIETRPSTSALKRALLTALRCVDPDAEKRPRMSQVVRMLESEEYPIPREDRRRRRSQAGNIELETQREASDTDKSDNPDSKPNGRSQLVQ* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2482 504 MobiDBLite consensus disorder prediction 444 494 - -
Apr1g2482 504 MobiDBLite consensus disorder prediction 444 504 - -
Apr1g2482 504 ProSitePatterns Protein kinases ATP-binding region signature. 188 211 IPR017441 GO:0005524
Apr1g2482 504 SMART serkin_6 182 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2482 504 Pfam Protein kinase domain 183 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2482 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Apr1g2482 504 Gene3D Transferase(Phosphotransferase) domain 1 258 469 - -
Apr1g2482 504 Gene3D Phosphorylase Kinase; domain 1 163 257 - -
Apr1g2482 504 ProSiteProfiles Protein kinase domain profile. 182 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2482 504 SUPERFAMILY Protein kinase-like (PK-like) 166 461 IPR011009 -
Apr1g2482 504 CDD STKc_IRAK 188 454 - -
Apr1g2482 504 MobiDBLite consensus disorder prediction 105 139 - -
Apr1g2482 504 PANTHER OS01G0323000 PROTEIN 2 500 - -
Apr1g2482 504 PANTHER RECEPTOR-LIKE KINASE PLANT 2 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2482 Apr-Chr1 34421423 34426640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2482 159 456 Trihelix Transcription Factor Family AT1G70460 50.825 1.01e-94 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Apr1g2482 Pkinase 1.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2482 - - gmx:732653 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2482 1 34421423 34426640 Apr1g2482 1 34421423 34426640 ECH
Apr9g2368 9 31279587 31284173 Apr1g2482 1 34421423 34426640 PCT