Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2477 ATGGTGATCTTAAACCTTGGGAGGAAGAAAGAGGGGCAGGGAATGCGACTTGGGAAATATGAATTAGGAAGGACACTTGGAGAAGGCAATTTTGGAAAAGTCAAGCTGGCAAGGGACACCAATTCTGGTAAACTTTTTGCTATTAAGATACTTGAGAAGAGCAAGATCATTGACCTCAATAACACTGATCAGATAAAGAGGGAAATATCCACCTTGAAGCTCCTTAAACATCCCAACATCGTTAGATTATACGAGGTCTTGGCTAGCAAAACCAAAATTTATATGGTACTTGAGTACGCGAATGGAGGAGAGTTATTTGACAAAATTGCATCCAACGGTAAACTTAAAGAAGCTGATGGTAGGAAGATGTTCCAACAGTTGATTGACGTTGTGAGCTATTGCCACAATAAAGGTGTCTACCACCGGGATCTCAAGCTGGAGAATGTGCTAATGGATGCCAAAGGGAACATAAAGATAACCGACTTTAACCTTAGTGCTTTGCCCCGGCATTTTAGGGCAGATGGGTTGCTGCATACAACCTGTGGAAGTCCCAACTATGTTGCTCCAGAGATCCTTGCCAATAGGGGCTATGATGGTGCAACATCAGATATATGGTCATGTGGAGTTATCTTGTATGTAATTCTAACAGGATACCTTCCTTTTGATGATAGAAATCTTGCAGTTCTCTATCAAAAGATTTTTAAAGGAGATGTTCAGATACCAAGATGGCTATCACCTGGTGCCCAATACATTATCAGGAGGATTCTTGATCCCAATCCTAAAACCCGGATAACAATGGCTATGATCAAAGAAGATGAATGGTTCAAGGAGGGCTATAACCCTGCTAATCCAGAAGATGTGGAAGAGGATGTATATATTGATGATGAAGCCTTTTCCATCCATGATGAGTCACTAGAATATCAGGGGGGTCCAGGATCACCAACACTCATCAATGCTTTTCAGTTGATAGGGATGTCTTCATGTCTAGACCTCTCTGGCTTTTTTGAGAAAGAGGATGTCTCTGAGAGGAAGATAAGATTTACATCAACCCATTCACCTAAAGATTTGGCTGAGGGGATTGAAGACATTGTAACTGGAATGGGATTTAGAGTCCAGAAGAAAAATGGAATGTTGAAAGTGATACAAGAGAACAAAGCACAGAAAAGTCTAGGTAGCCTCTCAGTGGCAGCAGAGGTGTTTGAAATAAGCCCATCCTTGTATGTAGTAGAGTTACGTAAGTCTTATGGAGATGCTTCTGTATATAGACAGCTATGCAAGAAGTTATCAAATGATTTGGGTGTTCATCCAAAGCAACAGCTAGGCAGCTCTGAAGTGATATGCTGA 1344 0.4122 MVILNLGRKKEGQGMRLGKYELGRTLGEGNFGKVKLARDTNSGKLFAIKILEKSKIIDLNNTDQIKREISTLKLLKHPNIVRLYEVLASKTKIYMVLEYANGGELFDKIASNGKLKEADGRKMFQQLIDVVSYCHNKGVYHRDLKLENVLMDAKGNIKITDFNLSALPRHFRADGLLHTTCGSPNYVAPEILANRGYDGATSDIWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGDVQIPRWLSPGAQYIIRRILDPNPKTRITMAMIKEDEWFKEGYNPANPEDVEEDVYIDDEAFSIHDESLEYQGGPGSPTLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTSTHSPKDLAEGIEDIVTGMGFRVQKKNGMLKVIQENKAQKSLGSLSVAAEVFEISPSLYVVELRKSYGDASVYRQLCKKLSNDLGVHPKQQLGSSEVIC* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2477 447 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
Apr1g2477 447 Gene3D Kinase associated domain 1, KA1 312 434 - -
Apr1g2477 447 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Apr1g2477 447 PANTHER CBL-INTERACTING PROTEIN KINASE 21 11 437 - -
Apr1g2477 447 SMART serkin_6 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2477 447 SUPERFAMILY Protein kinase-like (PK-like) 17 301 IPR011009 -
Apr1g2477 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Apr1g2477 447 CDD CIPK_C 318 429 - -
Apr1g2477 447 PANTHER - 11 437 - -
Apr1g2477 447 Pfam NAF domain 314 373 IPR004041 GO:0007165
Apr1g2477 447 ProSiteProfiles Protein kinase domain profile. 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2477 447 Gene3D Transferase(Phosphotransferase) domain 1 11 308 - -
Apr1g2477 447 Pfam Protein kinase domain 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2477 Apr-Chr1 34376363 34382013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2477 83 440 CBL-interacting serine-threonine protein kinases AT3G17510 71.111 7.10e-177 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Apr1g2477 Pkinase 5.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2477 K07198 - gmx:100815660 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2477 1 34376363 34382013 Apr1g2477 1 34376363 34382013 ECH
Apr9g2373 9 31312622 31317313 Apr1g2477 1 34376363 34382013 PCT