Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2473 ATGGAAGAAAAAGTTGGAATAAAAAAATTGCTGGAAGATGAGGAAAGGCCATGTGATAAACTCTCCGTCCATAATTCTATGGGATCTACTCTTCTCAGCTTGAGCCTGAATAACTCAGAGCAGAAAACCCATCGAATTGAAGGACAGTCCCAAACCCAAATGGGCATGCTGCGAATCAAGCTTGAGGAAGCAAAGAAGGAGAATGAGATTTTAAGAGCTATGCTACATCAGGTCAATGAGCACTGCACCACTCTTCAAAATCGCATACTTTTGGCTATGCAGCAGCATCAACTATCTTCAGCATCACCTCGAAATAGTAATCATGACTTGCAGAGAGATCGAGAAGGTGCAGAGAAAGCTATGTTCACACGGCAGTTCTTGAATATTGGTGAGAAGAAAGTGGGAAGAAACATTGTGGATGATGAGTACAATGTTGAAGGTGAAATCAACAGCCAAATAACATCTAAAGAACCAAAACGCTCAGAAGATCAAGCATCTGAGGTTCCTTGCAGGAAAGCTAGAGTGTCCATAAGAGCACGATCAGATTTTTCTATGATGGGCGATGGATGTCAATGGAGAAAGTATGGACAAAAGACAGCAAAGGGAAACCCTTGCCCCCGAGCCTACTATCGTTGCAGCATGGGAACTGCATGTCCAGTTCGTAAGCAGGTGCAAAGGTGTTTCAAGGATGAGACTGTTCTCATCACAACCTATGAAGGGAACCATAACCATCCACTCCCACCAGCAGCCAGACCAATGGCAAGCTCAACATCAGCAGCATTGAACACGTTTCTTTCTGGCTCAATCACAAGTTCACATACCATCAGCACCCTATCAAACTCACACCTCTTCTCTTCATTGTCTAGTATTTCACCAACAGCTTTAGCTACTTTCTCCCCATCTGCAACATGTCCCACAGTAACACTGGACTTAACCCAACCTACTACCAATAACTATCTCCAATTCCAAAGAGCCACCACTTCACATGATCAAAGACAATCATTTTTCCCTTTACCACTAGATGGTCACCCTCAAACATATGAGGAGTTACACTTGTGTTCCAAGCTTCCAACCTTTATAACCCCAGAGAAAAGCCTTGCTTTGGTGGATGTAGTGAGTGAAGTTATGGTCAAAGATCCTTCTCTGAAGGCAGCATTGTTTGCAGCCATTTCCTCACTCACTGGAGATCATCCTCACAACAATAACATCAATAACAACAACCAAGATAATAAAAGTAGTGGTCACGACCCTTGTTCAAAGATGCCCGCAATACCACGTCATCATCCTTACACTACCCAGTTGATTTAG 1308 0.4327 MEEKVGIKKLLEDEERPCDKLSVHNSMGSTLLSLSLNNSEQKTHRIEGQSQTQMGMLRIKLEEAKKENEILRAMLHQVNEHCTTLQNRILLAMQQHQLSSASPRNSNHDLQRDREGAEKAMFTRQFLNIGEKKVGRNIVDDEYNVEGEINSQITSKEPKRSEDQASEVPCRKARVSIRARSDFSMMGDGCQWRKYGQKTAKGNPCPRAYYRCSMGTACPVRKQVQRCFKDETVLITTYEGNHNHPLPPAARPMASSTSAALNTFLSGSITSSHTISTLSNSHLFSSLSSISPTALATFSPSATCPTVTLDLTQPTTNNYLQFQRATTSHDQRQSFFPLPLDGHPQTYEELHLCSKLPTFITPEKSLALVDVVSEVMVKDPSLKAALFAAISSLTGDHPHNNNINNNNQDNKSSGHDPCSKMPAIPRHHPYTTQLI* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2473 435 MobiDBLite consensus disorder prediction 151 171 - -
Apr1g2473 435 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 18 408 - -
Apr1g2473 435 MobiDBLite consensus disorder prediction 395 435 - -
Apr1g2473 435 ProSiteProfiles WRKY domain profile. 181 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g2473 435 SUPERFAMILY WRKY DNA-binding domain 179 247 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr1g2473 435 Coils Coil 54 81 - -
Apr1g2473 435 MobiDBLite consensus disorder prediction 395 415 - -
Apr1g2473 435 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 18 408 IPR044810 GO:0003700
Apr1g2473 435 MobiDBLite consensus disorder prediction 153 171 - -
Apr1g2473 435 Pfam WRKY DNA -binding domain 188 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g2473 435 Gene3D WRKY domain 171 248 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr1g2473 435 SMART WRKY_cls 186 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2473 Apr-Chr1 34326006 34332452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2473 47 393 WRKY Transcription Factor Family AT4G04450 36.000 1.97e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr1g2473 WRKY 1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2473 - - gmx:100781603 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2473 1 34326006 34332452 Apr9g2392 9 31432017 31436084 PCT