Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2464 ATGGATGGTGTCACTGTCAAGTCCGAGGTTCCCGTTCTAGAATCTTCTGCCCAGAAACCTGGTGACAACGTTAGTTCCAACATGGAGGAACACCACCTGGTCCAGCCCAACGTGGTTGATGGGTCAACGATTCATCCCTCTGCCAACAAGTCAGTGCCAGCATCTGGACTTAATGCAGTGATTCCTAGTACAAGCCAGCTTACCATCTTCTATAATGGGGGTGTTTGTGTCTATGATGGAATCCCTGCAGAAAAGGTGCATGAAATAATGCTTATGGCTGCCGCTGCTGCCAAATCTACTGAAATGAAGAAGATTGGGACACAGTCCACCCTCATTTCACCTGTTCCCACAAGACCTTCTTCTCCACATGGAATCACTAACAGTATTGCTTCATCCCAGAATAATTCAATCTGCAGGCTGCAAGCTGAATTTCCAATAGCACGCAGGCATTCACTTCAAAGGTTTCTTGAGAAGCGACGAGACAGGCTGGGCAGCAAATCTCCTTATCCTTCCTCATCAACAACAAAAGTGGCTGACAACATAGAGAACAACTGCTGTGCTGACAATGCACCAGAATTGATTTCCTTGAAACAATCAGGGGAGGAGTTTCAGCCGACTGTCTCTGCGTCTTGA 633 0.4708 MDGVTVKSEVPVLESSAQKPGDNVSSNMEEHHLVQPNVVDGSTIHPSANKSVPASGLNAVIPSTSQLTIFYNGGVCVYDGIPAEKVHEIMLMAAAAAKSTEMKKIGTQSTLISPVPTRPSSPHGITNSIASSQNNSICRLQAEFPIARRHSLQRFLEKRRDRLGSKSPYPSSSTTKVADNIENNCCADNAPELISLKQSGEEFQPTVSAS* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2464 210 PANTHER DIVERGENT CCT MOTIF PROTEIN 40 188 - -
Apr1g2464 210 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 40 188 IPR040390 -
Apr1g2464 210 Pfam tify domain 62 94 IPR010399 -
Apr1g2464 210 SMART tify_2 60 95 IPR010399 -
Apr1g2464 210 MobiDBLite consensus disorder prediction 166 180 - -
Apr1g2464 210 MobiDBLite consensus disorder prediction 159 180 - -
Apr1g2464 210 Pfam Jas motif 145 169 IPR018467 -
Apr1g2464 210 ProSiteProfiles Tify domain profile. 60 95 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2464 Apr-Chr1 34254572 34259057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2464 66 176 Tify Gene Family AT5G20900 50.000 2.21e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Apr1g2464 tify 4.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2464 K13464 - gmx:100306045 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2405 9 31518548 31521229 Apr1g2464 1 34254572 34259057 PCT