Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2461 ATGCCTCTTCATTCAACCCAAATAGTAACACCAAAATGCACTATCACGCTCATTTCCTTGTCCTTGATGATGCTTCTTGGCGCGTGCACCACACTTGCTGCTGCTGCTCCAACTCAGACCGTGGGTTCGGAGCTGCTCAAGGTTTCTCCCTCTGTGTTTGCGGGGACAGTGAAAACTGTTGTTGACGTTTTGCAAGATGTTTCCTCTATTCTCTCTGAGTTTGCCTCTGGCTTTGGTGATTTTCGTCTTTCTAACGCCATCTCTGATTGCCTTGATTTGCTTGACCTTTCCTCTGATGAGCTCGATTGGACTGTGTCTGCTACCCAGAATCCCCGAGGAAATCACAACAGTACTGGGAAGCTGAGTTCCGATTTGAGGACATGGCTAAGTGCTGCACTGTCGAATCAAGATACATGCATGGACGGATTTGAAGGTACCAATGGCATAGTGAAGAGTCTAGTATCCACAGGCCTAGGCCAAGTGATGTCATTGCTTCAGCAACTTCTCACACAGGTGAACCCTGTTTCGGATCACTTCTTTTCTTCCCCCGATCAGGGTCAATTTCCTTGGTGGGTCAAACCAGGGGAGAGGAAGCTACTTGAAGCAAATGGGGTGCATGTGGACGCTGTGGTAGCTGCAGATGGGAGTGGAAACTACACTAAAATAAAGAATGCGATTATGGCAGCACCTGATTATAGCATGAAACGCTATGTGATACACGTAAAGAGGGGTGTTTACCATGAGAACGTTGAGATCAAGAAGAAGAAGTGGAACCTCATGATGATTGGAGATGGCATGGATGCTACTATTATCACCGGTAAACGGAATTTCATTGATGGTTGGACCACATTCCGGTCAGCTACCTTTGCTGTGAGTGGCAGAGGGTTCATAGCACGAGACATTACCTTCAGGAACACTGCGGGGGCCCAGAAGCACCAAGCAGTGGCACTAAGATCTGACTCTGACCTCTCTGTATTCTACCGATGTGGGATTTTGGGTTACCAAGACAGCCTCTATACCCACACCATGCGCCAATTTTTTAGAGAATGCAAAATCACTGGCACAGTGGATTTCATCTTTGGTGATGCCACTGCTATATTTCAAAACTGCCAAATACTCGCTAAAAAAGGCTTACCAAACCAAAAGAACACGATCACAGCACATGGGAGAAAAGACCCTGATGAACCAACCGGTTTCTCCATCCAATTTTGCAACATCTCTGCTGATTCTGACCTTGTTACCTCGGTTAATTCCACCCAAACATACCTTGGTAGACCATGGAAACCATATTCTAGAACAATTTTCATGCAATCTTACATAAGTGAGGTGTTGAGGCCAGAAGGGTGGTTAGAGTGGAATGGAGACTTTGCTTTGGACACATTGTACTATGCAGAGTACATGAATCATGGGCCAGGTGCTGGACTAGGTGACCGAGTGAAATGGCCGGGGTACCATGTGATGAATGATTCTAGCGAAGCTAGTAATTTCACGGTGACACAATTTATTGAGGGGAATTTATGGTTGCCTTCAACGGGGGTAGCGTTCACTGCTGGATTGGATGTATAA 1566 0.463 MPLHSTQIVTPKCTITLISLSLMMLLGACTTLAAAAPTQTVGSELLKVSPSVFAGTVKTVVDVLQDVSSILSEFASGFGDFRLSNAISDCLDLLDLSSDELDWTVSATQNPRGNHNSTGKLSSDLRTWLSAALSNQDTCMDGFEGTNGIVKSLVSTGLGQVMSLLQQLLTQVNPVSDHFFSSPDQGQFPWWVKPGERKLLEANGVHVDAVVAADGSGNYTKIKNAIMAAPDYSMKRYVIHVKRGVYHENVEIKKKKWNLMMIGDGMDATIITGKRNFIDGWTTFRSATFAVSGRGFIARDITFRNTAGAQKHQAVALRSDSDLSVFYRCGILGYQDSLYTHTMRQFFRECKITGTVDFIFGDATAIFQNCQILAKKGLPNQKNTITAHGRKDPDEPTGFSIQFCNISADSDLVTSVNSTQTYLGRPWKPYSRTIFMQSYISEVLRPEGWLEWNGDFALDTLYYAEYMNHGPGAGLGDRVKWPGYHVMNDSSEASNFTVTQFIEGNLWLPSTGVAFTAGLDV* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2461 521 Pfam Pectinesterase 208 505 IPR000070 GO:0030599|GO:0042545
Apr1g2461 521 Gene3D - 203 519 IPR012334 -
Apr1g2461 521 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 48 519 - -
Apr1g2461 521 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 175 IPR035513 -
Apr1g2461 521 PANTHER PECTINESTERASE 48 519 - -
Apr1g2461 521 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 166 IPR035513 -
Apr1g2461 521 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
Apr1g2461 521 TIGRFAM PME_inhib: pectinesterase inhibitor domain 56 162 IPR006501 GO:0004857
Apr1g2461 521 SUPERFAMILY Pectin lyase-like 206 518 IPR011050 -
Apr1g2461 521 CDD PMEI-like_4 41 176 - -
Apr1g2461 521 Pfam Plant invertase/pectin methylesterase inhibitor 31 156 IPR006501 GO:0004857
Apr1g2461 521 SMART PMEI_2 37 171 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2461 Apr-Chr1 34219172 34222937 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2461 22 519 Carbohydrate Esterase AT3G43270 64.971 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2461 K01051 - gmx:100777500 840.876