Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2460 ATGTCCACCCCCACATTCGTCTTCTCCTTCTTGTTGGTGTCTCTGTGCACCCCCTTTGTTCACTCCGGTTTCGAGTGCCTCAGGGTCTCTCCCTCTCAATTCCTTCACTCCGCCAGAACAGTAGTTGGCGTTTTGCAAGATGTTAACTCAACTCTCCTCTCTGAGTTAACCAATGTCAATAATAACGTTCACAACTTTCGTCTTTCTGACGCCATTTCCGCTTGTCTTGACTTGTTGGACTTATCGGCTGATCAACTCAGCTGGTCCATTTCCGCTATTGAAAATCCCCAAGGGAAGCACAACGGTACTGGGAATCTAAGCAATGATTTGAGTACATGGCTAAATGCAGCACTTGCGAATACAGATACATGCATGGACGGTTTTGAAGACACGAATTGGAATGTGAAGGGTCTAATATCCACTAGAATTGACCATTTGAACTCGATGGTGCAAAACCTGTTAAACCAGATGCACCCTGCTTCGAGTCACTTCACCAACAGGGGTCAATTTCCTTCGTGGGTTGAATCATGGGACAAAAAGCTGCTATTTACAAATGGGGTGAGTTGGGATGCTGTGGTTGCTACTGATGGGAGTGGGAATTATAGTAAGGTGATGGATGCAGTGCACGCAGCAAGTGATTATAGCATGAGGCGCTATGTGATTTACGTAAAGAGGGGTGTTTATGTGGAGAACGTTAACATTGGTAAGAAGAAGTGGAACATTGTGTTGATGGGAGAAGGCATGGATGTTACTGTTATCACTGGTAACCTCAGTTATAGTAAAAATTTGACCACATACAGAACAGCTACCTTTGCTGTGAATGGCAGAGGATTCATAGCACGAGACATTTCCTTCAGGAACACTGCAGGGCCTGAAAGGGGCCAAGCTGTTGCTTTAAGATCAGACTCTGACCTCTCTGTCTTCTACCGATGTGGGATTTTCGGTTACCAAGACAGCCTCTATGCCCACGGCTTGCGCCAATTCTATAGAGAATGCAAAATCACTGGCACCGTTGATTTCATCTTTGGATATGCCACTGCAGTGTTCCAAAGTTGCCAGATATTGGTCAAAAAAGGTTTAACAAAACAAAAAAACACTATCACTGCTCAAGGGAAAAGAAACTCAACCGACCCATCTGGTTTCTCAATTCAATTTTGTAACATTTCAGCAGATGATGACCTTCTGCCCGCTGTTAATTCCACCCTAACATACCTTGGTAGACCATGGAAGCCTTATTCGAGGACAATTTTTATGCAATCCTACATCAGTGAGGTGTTATCGTCAAAGGGTTGGCTAGAGTGGAATGGATCTGCATATTTGGACACATTGTACTATGCTGAGTACAATAATTATGGACCGGGAGCTTTTCTAAATGACCGTGTTAAATGGCCAGGGTACCATGTGATTAACGATTCTAGCTTAGTTAGTAACTTCACAGTCACCCAATTGATTCTTGGGGATCTTTGGTTACCTTCAACGGGTGTAAGGTTCATCCCTGGATTTGGGAATTAA 1512 0.4398 MSTPTFVFSFLLVSLCTPFVHSGFECLRVSPSQFLHSARTVVGVLQDVNSTLLSELTNVNNNVHNFRLSDAISACLDLLDLSADQLSWSISAIENPQGKHNGTGNLSNDLSTWLNAALANTDTCMDGFEDTNWNVKGLISTRIDHLNSMVQNLLNQMHPASSHFTNRGQFPSWVESWDKKLLFTNGVSWDAVVATDGSGNYSKVMDAVHAASDYSMRRYVIYVKRGVYVENVNIGKKKWNIVLMGEGMDVTVITGNLSYSKNLTTYRTATFAVNGRGFIARDISFRNTAGPERGQAVALRSDSDLSVFYRCGIFGYQDSLYAHGLRQFYRECKITGTVDFIFGYATAVFQSCQILVKKGLTKQKNTITAQGKRNSTDPSGFSIQFCNISADDDLLPAVNSTLTYLGRPWKPYSRTIFMQSYISEVLSSKGWLEWNGSAYLDTLYYAEYNNYGPGAFLNDRVKWPGYHVINDSSLVSNFTVTQLILGDLWLPSTGVRFIPGFGN* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2460 503 ProSitePatterns Pectinesterase signature 2. 334 343 IPR033131 -
Apr1g2460 503 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 154 IPR035513 -
Apr1g2460 503 Gene3D Invertase/pectin methylesterase inhibitor family protein 16 158 IPR035513 -
Apr1g2460 503 Pfam Plant invertase/pectin methylesterase inhibitor 53 154 IPR006501 GO:0004857
Apr1g2460 503 SMART PMEI_2 30 156 IPR006501 GO:0004857
Apr1g2460 503 Gene3D - 185 501 IPR012334 -
Apr1g2460 503 PANTHER PECTINESTERASE 165 501 - -
Apr1g2460 503 PANTHER PECTINESTERASE 28 159 - -
Apr1g2460 503 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 28 159 - -
Apr1g2460 503 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 165 501 - -
Apr1g2460 503 CDD PMEI-like_4 5 159 - -
Apr1g2460 503 ProSitePatterns Pectinesterase signature 1. 215 234 IPR018040 -
Apr1g2460 503 SUPERFAMILY Pectin lyase-like 187 500 IPR011050 -
Apr1g2460 503 Pfam Pectinesterase 190 487 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2460 Apr-Chr1 34212030 34215811 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2460 1 501 Carbohydrate Esterase AT3G43270 54.753 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2460 K01051 - gmx:100798620 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2415 9 31592289 31595397 Apr1g2460 1 34212030 34215811 PCT