Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2459 ATGGCTTCTTCATCTCATAAACTCTTCTTCTTGCTGATTGCAATCTTCTTCTCACATGCTTTGGCTGTCCCCTCCTCCAATGCTTCCACGACATCTCATTCTCATACCAAACTCTCTTCCTTAAGATATTTCTGTAGAACTACCCCACACCCTGAAGTTTGCTTCAATTCATTGAAGCTATCCATTTCTATAAACATAAGTCCAAACATCATCAACTACCTCCTTCAGTCCCTCCAAGTAGCAATATCTGAAACCACAAAGCTGTCAAATTTATTCCACAATGCTGGACACTTAAACATCATAGAGAAGCAAAGAGGAGCAGTTCAAGACTGCAAGGAACTCCATCATTCTACTTTGGCTTCTTTGGAAAGATCATTATCTGGAATTCGTTCCTCCAACTACAAGAATTTTGTTGATGCAAAAGCCTACCTAAGTGCAGCCCTCACCAACAAGAACACATGCTTAGAAGGCCTAGATTCTGCTTCTGGTTCCCAGAAGCCAGTTTTGGTGAAATCAGTGATCAACACTTACAAACATGTGAGTAACTCTCTTTCAATGCTCTCTAAGCCTGGGATAGGGTCTTCTGCAAGCCACATGAACCAGCCTTCAATGGGTGCTCCAAAGTGGTTGTCAAGCAAAGACAAAAGCCTCTTTCAAGGCTTGGATGGAGAAGAATATGATGAAATGCTTGTTGTGGCTGTTGATGGAACTGGTAACTTTACCACCATCACTGAAGCCATCAACTTTGCTCCTAATAACAGCACTGTTAGGACAGTGATCTATGTCAAAGAAGGGGTTTACGAGGAAAATGTAGAAATCCCAAGCTATAAAACCAATATTGTTATGCTTGGCGATGGAAGTGATGTCACTTTCATAACTGGTAACAGAAGCGTTGGTGATGGCTGGACCACTTTCAGATCTGCAACTCTAGCGGTCTCTGGTGATGGCTTTCTGGCACGTGACATAGCAGTTGAGAACAGTGCAGGGCCAGGGAAGCATCAAGCAGTGGCCTTGAGAGTAAATGCAGACTTAACTGCTTTTTACAGGTGTGCCATCTATGGTTACCAAGACACTTTGTATGTTCACTCCTTTAGACAGTTCTATAGAGAGTGTGACATTTATGGTACCATAGATTTCATATTTGGTAATGCAGCAGTGGTTCTCCAGGAATGTAACATTATATCCAGAATGCCATTACCTGGCCAATTCACTGTTATTACAGCACAATCCAGAGATAGTCCTGATGAAGAAACTGGCATCTCAATCCAACACTGCCAAATCCTAGCTACCGCTGATTTGTATTCCAATTCTAATGGCTTTAAGAGCTACCTTGGAAGGCCATGGAGGGTCTATTCTCGCACTGTTTTCCTTGAGTCCTACATTGATGACTTCATTGACCCAAAGGGTTGGATAAAGTGGTCTAATAATGATCAAAGCTTAGACACTTTGTATTATGGAGAGTATGAGAATTATGGACCCGGTTCAAGCATAGATAATCGTGTAGAATGGTTTGGGTACCATTCAATGGATTACAATGATGCCTATAATTTCACAGTTTCAGAGTTTATTAATGGAGATACTTGGCTCGAGTCTACTTCCTTTCCTTATGATGATGGGATTTGA 1623 0.4165 MASSSHKLFFLLIAIFFSHALAVPSSNASTTSHSHTKLSSLRYFCRTTPHPEVCFNSLKLSISINISPNIINYLLQSLQVAISETTKLSNLFHNAGHLNIIEKQRGAVQDCKELHHSTLASLERSLSGIRSSNYKNFVDAKAYLSAALTNKNTCLEGLDSASGSQKPVLVKSVINTYKHVSNSLSMLSKPGIGSSASHMNQPSMGAPKWLSSKDKSLFQGLDGEEYDEMLVVAVDGTGNFTTITEAINFAPNNSTVRTVIYVKEGVYEENVEIPSYKTNIVMLGDGSDVTFITGNRSVGDGWTTFRSATLAVSGDGFLARDIAVENSAGPGKHQAVALRVNADLTAFYRCAIYGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAVVLQECNIISRMPLPGQFTVITAQSRDSPDEETGISIQHCQILATADLYSNSNGFKSYLGRPWRVYSRTVFLESYIDDFIDPKGWIKWSNNDQSLDTLYYGEYENYGPGSSIDNRVEWFGYHSMDYNDAYNFTVSEFINGDTWLESTSFPYDDGI* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2459 540 Pfam Plant invertase/pectin methylesterase inhibitor 41 186 IPR006501 GO:0004857
Apr1g2459 540 Pfam Pectinesterase 230 526 IPR000070 GO:0030599|GO:0042545
Apr1g2459 540 SUPERFAMILY Pectin lyase-like 229 537 IPR011050 -
Apr1g2459 540 ProSitePatterns Pectinesterase signature 2. 373 382 IPR033131 -
Apr1g2459 540 TIGRFAM PME_inhib: pectinesterase inhibitor domain 17 188 IPR006501 GO:0004857
Apr1g2459 540 PANTHER PECTINESTERASE 7 539 - -
Apr1g2459 540 SMART PMEI_2 34 186 IPR006501 GO:0004857
Apr1g2459 540 PANTHER PECTINESTERASE 7 539 - -
Apr1g2459 540 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 189 IPR035513 -
Apr1g2459 540 CDD PMEI-like_3 44 190 - -
Apr1g2459 540 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 189 IPR035513 -
Apr1g2459 540 Gene3D - 224 540 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2459 Apr-Chr1 34206981 34209091 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2459 44 540 Carbohydrate Esterase AT2G26440 65.753 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2459 - - gmx:100776969 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2459 1 34206981 34209091 Apr1g2459 1 34206981 34209091 ECH