Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2458 ATGGCCTTTCAAGATTTTGATCTCATATCAGAACGACGAAAAAACCACCAAAGAGAAAGGCTTAAGAAAAAGATTCTCATTGGTGTTGTTTCTGCCGTTCTCCTTGCATGTGTGGTAGCTGCTGCGGCATTTGTTGTGGTAAAAAGGACTGGTCCTGATACCAAAACTAAGCATGCATCTCCCTTAGCACCTGCCACTAACACTAACACACATGTGGATCAAAATTCAAGGCTCGTGAAAATGATATGTGGCTCAGCAGAATATAAGAGCAAATGTGAAAGCACCCTGAGTGAGGCATTGGAGAAGGACCCCAAATTGGCTGAACCCAAGGATCTTATCATGGTATCGATGATTCTTGCTGAAACTGAGATTGACAGTGCCTTCAACAAAACCACCACCATGAACTTTGCATCAGAGGAAGAGAAGGGTGCCTATGAAGATTGCAAGGAGTTGTTTGATGATGCCAAGAAAGAACTTGGATTCTCTATTACTGAAGTTGAGTCAAATGATATGTCCAAGATTTCTGCAACTGCTCCTGAAATCAACAACTGGCTCAGTGCAGTTATGTCTTACCAAGAAACTTGCATTGATGGGTTCCCTGAAGGGGAGTTGAAGAATAAACTCCAAAATCTTTTCAATGGATCGAAGGAACTTGTTAGCAATTCCCTTGCGGTTTTATCACAGGCCTCTTCATTCTTTTCTATATTCAAAGGAGCTGGTAATATTCACCTTCCTTGGGAGATCATTGATGATGCTCCTGCTCCTGCTCCTGCTTCTTTTGATCTTGGTTCTGGTACTGGTTCTGGTTCTGGTTATGATGGTTCTGCTTCTGCTCCTGGTCTTGATCCTGCTTCTGTTCTCGCTCCTGGTTCGGCTCCTGGCCCAGTTCCTGATTGGTCTGCCCCACTTCCTACTTGGACTGGCTCAGTTCCCACTTGGGCTGGCCCTACGGAGTTGAAGGGATCAGATGAGAAACCCACACCTAATGTCACTGTGGCAAAAGATGGCAGCGGAAATTTTAAAACCATCTCTGATGCTTTGGCAGCCATCCCACAAACATATGAAGGAAGGTACGTGGTTTATGTTAAAGAAGGAGTGTACGATGAGACAGTGACAGTGCAAAGAAACACGGTAAATCTAACCATGTATGGGGATGGATCTACAAAGAGCATCATCACTGGCAACAAAAACTATGTGGATGGTGTCAGGACTTTCCAAACTGCATCATTTGTGGTACTAGGAGATGGATTCTTGGGCAGAGACATGGGATTTAGAAACACTGCCGGTGCAGAGAAGCACCAAGCTGTGGCTGCAAGAGTGCAAGCAGATCGTGTAGAGTTTGTAAACTGTGCCTTTGAGGGCTACCAAGACACTCTATATGCCCAAACCCACAGACAATTCTACCGTGACTGTGTCATTTCTGGAACCATTGATTTCATCTTTGGTGATGCAGCTGCAGTGTTCCAAAACTGCACCATGGTTGTCAGAAAGCCACTGGACAATCAGCAAAACATTGTGACTGCACAAGGGAGAATTGACAAGCTATCGAACACTGGTTTTGTACTTCAAAAGTGTGTGATCAAGGCTGATGATGATTTGGTTCAAGTGAAAGATAGGATCAAGAACTACCTTGGGAGACCATGGAAGGAGTACTCAAGAACCATCATAATGGAATCTGAGATTGGGGACTTGATTCACCCTGATGGGTGGTTACCTTGGGATGGCGACTTTGCACTCAACACATTGTATTATGGTGAGTACAACAACAATGGTGCTGGTGCCAACACCAATGCTAGGGTCAATTGGCCTGGTCGCAAAGTCATTAACAAGGATGAGGCTAGCAAGTACACTGTAGAGGCCTTCTTGGAAGGGTCATGGATCAATGGCACAGGTGTTCCAGCTCAGATGGGTTTGTACAATTAA 1923 0.4477 MAFQDFDLISERRKNHQRERLKKKILIGVVSAVLLACVVAAAAFVVVKRTGPDTKTKHASPLAPATNTNTHVDQNSRLVKMICGSAEYKSKCESTLSEALEKDPKLAEPKDLIMVSMILAETEIDSAFNKTTTMNFASEEEKGAYEDCKELFDDAKKELGFSITEVESNDMSKISATAPEINNWLSAVMSYQETCIDGFPEGELKNKLQNLFNGSKELVSNSLAVLSQASSFFSIFKGAGNIHLPWEIIDDAPAPAPASFDLGSGTGSGSGYDGSASAPGLDPASVLAPGSAPGPVPDWSAPLPTWTGSVPTWAGPTELKGSDEKPTPNVTVAKDGSGNFKTISDALAAIPQTYEGRYVVYVKEGVYDETVTVQRNTVNLTMYGDGSTKSIITGNKNYVDGVRTFQTASFVVLGDGFLGRDMGFRNTAGAEKHQAVAARVQADRVEFVNCAFEGYQDTLYAQTHRQFYRDCVISGTIDFIFGDAAAVFQNCTMVVRKPLDNQQNIVTAQGRIDKLSNTGFVLQKCVIKADDDLVQVKDRIKNYLGRPWKEYSRTIIMESEIGDLIHPDGWLPWDGDFALNTLYYGEYNNNGAGANTNARVNWPGRKVINKDEASKYTVEAFLEGSWINGTGVPAQMGLYN* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2458 640 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 229 IPR035513 -
Apr1g2458 640 ProSitePatterns Pectinesterase signature 2. 473 482 IPR033131 -
Apr1g2458 640 Pfam Plant invertase/pectin methylesterase inhibitor 78 224 IPR006501 GO:0004857
Apr1g2458 640 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 14 638 - -
Apr1g2458 640 Gene3D - 324 638 IPR012334 -
Apr1g2458 640 PANTHER PECTINESTERASE 14 638 - -
Apr1g2458 640 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 228 IPR035513 -
Apr1g2458 640 TIGRFAM PME_inhib: pectinesterase inhibitor domain 68 228 IPR006501 GO:0004857
Apr1g2458 640 SMART PMEI_2 74 225 IPR006501 GO:0004857
Apr1g2458 640 CDD PMEI-like_3 82 231 - -
Apr1g2458 640 Pfam Pectinesterase 329 624 IPR000070 GO:0030599|GO:0042545
Apr1g2458 640 SUPERFAMILY Pectin lyase-like 327 633 IPR011050 -
Apr1g2458 640 MobiDBLite consensus disorder prediction 259 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2458 Apr-Chr1 34200969 34203335 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2458 1 640 Carbohydrate Esterase AT4G33230 42.209 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2458 - - gmx:100796485 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2458 1 34200969 34203335 Apr1g2458 1 34200969 34203335 ECH
Apr9g2417 9 31601589 31604026 Apr1g2458 1 34200969 34203335 PCT