Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2457 ATGACGAGTAAAACCAGCCATTTTTTTCCTCTTGGTAATGTGCGAATGAGAACACAAGAATTGGTGATAACCGTTATAGTATTAGGAAGTGCACTGACATGGATCTCCATGTCAGAACTAGAGCTTGCTCACTCTGAATGCAATCTTACAAGATACCCTAATCTATGTGCTGAAACCTTGACGGGATTGGGTTCAGGGAATCACAATGTCGATAACATTGTGGCTCTTGTTAACAAAACCATATATGAAACCAACTTGTCAAGTTCATATTTTGCTGAATTCAAGATTAATGATGTTCAAGAAGCCCATTCTGTCGTAGACTATTGTGAAGAGCTAATGGGTATGTCACTGAAAAGGCTGGACCAATCCATGAAAGCACTAAAATCTCCTACAAGAAACAAGAATGACATCCAAACATGGCTAAGTGCTTCTCTAACTTTCAAACAATCTTGCAAAGACTATGTAGATGCACACAGTTCTAAACTTGGCATCATGGAAAGCATGTCCAAGAAGATGGAGTATCTTTCTCAATTGGGAAGCAACTCGTTGTCTCTTGCAAACAGGATCACCAACATGCCAAAGAGCACAAAAGCTAGCCACAAACTTGGTGCCAATGAAAAGGAACATGAATTTCCCACGTGGGTATCAGCCAAGGGGCGAAAACTACTTCAGGGAGCCACAATAAAAGCAAATGCAATAGTAGCACAAGATGGTTCAGGAAACTACAAGACAATTTCTGAAGCCATTGAGGCAGCTTCAGGAACACGGTTTGTGATTTATGTTAAGAAAGGGGTGTATAAGGAGAAGATTCGCACTAAGAAAGATGGTATCACCTTGATAGGAGATGGCAAATATTCTACTATCATTGTTGGTGATGACAGTGTTGCCAAGGGTGCTACCTTACCTGACTCGGCCACATTTACAATCACAGGCGATGGATTCGTTGCGCGTGACATGGGTTTCCACAACAGCGCGGGTCCTGAAGGCCAACAAGCCGTGGCACTGAACATCGCATCGGATCGCTCGGTACTCTACAGATGCAGCATAGCAGGGTCCCAAGACACCCTCTACGCCCACGCGCTTCGCCAATTCTACACAGAATGTGACATCCACGGCACAATAGACTTCATCTTCGGAAACGCAGCTGCCGTTTTCCAACGCTGCAGCTTGATCCTTCGTCGGCCCCACAGTGGAGGCTACAACGCCGTTTTGGCAAACGGAAGAACAGACCCAGAACAGAACACTGGGTTCTCTGTTCACAAGTGTAGCATAACACCCGGTTCTGATTTATCGCCAGTGAAACGCTCGTTTAGTTCGTTTTTGGGGAGGCCTTGGAAGGAGTATTCAAGAGCGATAGATATGGGGTGTAGCATAGATGATGCTATTGCAGCGAGGGGTTGGATTGAGTGGCCTGGTTCTGGAAGCTCTGCGTTGAGAACTTTTGCAGAGTATGGTAACGAAGGGCCTGGTGCTGGAACTTCCAAGAGAGTGCTGTGGCCTGGGTTTCGTCTTCTGGGAGCTGATGAGGCTGTTAAGTTCACTGTTGCTAGTTTCATCGCTGGAAATTCATGGATTCCTTCTTCTGGTGCACTTTCATTTCGGGGCTCACTTGAGTGTGCTTAA 1623 0.4553 MTSKTSHFFPLGNVRMRTQELVITVIVLGSALTWISMSELELAHSECNLTRYPNLCAETLTGLGSGNHNVDNIVALVNKTIYETNLSSSYFAEFKINDVQEAHSVVDYCEELMGMSLKRLDQSMKALKSPTRNKNDIQTWLSASLTFKQSCKDYVDAHSSKLGIMESMSKKMEYLSQLGSNSLSLANRITNMPKSTKASHKLGANEKEHEFPTWVSAKGRKLLQGATIKANAIVAQDGSGNYKTISEAIEAASGTRFVIYVKKGVYKEKIRTKKDGITLIGDGKYSTIIVGDDSVAKGATLPDSATFTITGDGFVARDMGFHNSAGPEGQQAVALNIASDRSVLYRCSIAGSQDTLYAHALRQFYTECDIHGTIDFIFGNAAAVFQRCSLILRRPHSGGYNAVLANGRTDPEQNTGFSVHKCSITPGSDLSPVKRSFSSFLGRPWKEYSRAIDMGCSIDDAIAARGWIEWPGSGSSALRTFAEYGNEGPGAGTSKRVLWPGFRLLGADEAVKFTVASFIAGNSWIPSSGALSFRGSLECA* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2457 540 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 54-RELATED 31 530 - -
Apr1g2457 540 SUPERFAMILY Pectin lyase-like 226 529 IPR011050 -
Apr1g2457 540 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 190 IPR035513 -
Apr1g2457 540 PANTHER PECTINESTERASE 31 530 - -
Apr1g2457 540 CDD PMEI-like_3 47 191 - -
Apr1g2457 540 Pfam Plant invertase/pectin methylesterase inhibitor 44 185 IPR006501 GO:0004857
Apr1g2457 540 Gene3D - 225 535 IPR012334 -
Apr1g2457 540 TIGRFAM PME_inhib: pectinesterase inhibitor domain 38 188 IPR006501 GO:0004857
Apr1g2457 540 ProSitePatterns Pectinesterase signature 2. 370 379 IPR033131 -
Apr1g2457 540 Pfam Pectinesterase 231 522 IPR000070 GO:0030599|GO:0042545
Apr1g2457 540 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 191 IPR035513 -
Apr1g2457 540 SMART PMEI_2 38 185 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2457 Apr-Chr1 34191617 34194644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2457 95 528 Carbohydrate Esterase AT2G45220 47.153 2.40e-128 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2457 K01051 - gmx:100795439 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2457 1 34191617 34194644 Apr1g2457 1 34191617 34194644 ECH