Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2453 ATGGCTTCCGAGTCTGTTCCTTCTCTCAACGTCGTCGGATACATCCACACTACTTCTCCACCAAACCACTTATCCTCTCTGTCACACATCACTCTCATAACCGTAACGGTCCTCGCCGTCGCTGTTACTGTATCTCTTGCTCTGTACTTCATCATCCGTTACCGTCGCCGTTTCTCTCCGTCATCCGCTCCGGTCTTCTCCTCCTCGCATCGGATATCGCCGGAGATCGCTTCGTCTTCCCTCGCCGACTCCCTCCCGGCGTTCACCTTCTCCTCCGTCACGCGCCGCTCATCCTCCGCTGCCGCCGGTGACTGCGCCGTTTGCCTCTCGAAGTTCGAGCAACGCGACCTCCTCCGCCTCCTTCCGCTATGCTGCCACGCTTTCCACGCCGAATGCATCGACACGTGGCTCCAATCGAACCTCACGTGTCCGCTCTGCCGCTCTGTCGTTGCCACCTCCGAATCGGACCTCGCGAAGGTTTTCCGGTCGCCGTCCTTCGCCGGAGGCAACAGCTTCCGGCTGGAAATAGGTAACATCAGCAGCCGCCGCGGCGGAGATACATCTGACGCCGCCGGAAGGTCGTATTCTGTTGGCTCGTTCGAGTATTTCATCGACGAAGAGGCTGAGGTTCCGTTCAGTCATGCTCACCGGAGAAGCGTTTCCAGCGAGAAAGACGATGCTGCGGCGGTGGAGTTTCCGGCTTCGGAGCCGAGTTTAGCTGCTGAGGTTGGGCGTGGAAGTAGTAATAGCTGGTTGAAGGATTACGTTGATCGTCTTTCGGCTACGATGTCGTTTCGAAGCTCTGGAAGGTTCTTCACTGGGAGTAGTCGCCGAAGCGACGTCGTTGCAGTTGGAGATTACGATGTGGAAGCCAACCGTTTGGGGGAAGAAATCGGTGAAGTCTTTCGTTGGATTTCTGGGGTTTGA 927 0.5696 MASESVPSLNVVGYIHTTSPPNHLSSLSHITLITVTVLAVAVTVSLALYFIIRYRRRFSPSSAPVFSSSHRISPEIASSSLADSLPAFTFSSVTRRSSSAAAGDCAVCLSKFEQRDLLRLLPLCCHAFHAECIDTWLQSNLTCPLCRSVVATSESDLAKVFRSPSFAGGNSFRLEIGNISSRRGGDTSDAAGRSYSVGSFEYFIDEEAEVPFSHAHRRSVSSEKDDAAAVEFPASEPSLAAEVGRGSSNSWLKDYVDRLSATMSFRSSGRFFTGSSRRSDVVAVGDYDVEANRLGEEIGEVFRWISGV* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2453 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 152 IPR013083 -
Apr1g2453 308 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 296 - -
Apr1g2453 308 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Apr1g2453 308 SMART ring_2 105 146 IPR001841 -
Apr1g2453 308 Pfam Ring finger domain 104 147 IPR001841 -
Apr1g2453 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 3 296 - -
Apr1g2453 308 SUPERFAMILY RING/U-box 84 153 - -
Apr1g2453 308 CDD mRING-H2-C3H2C2D_ZSWM2 105 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2453 Apr-Chr1 34163370 34164296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2453 32 171 C3H Transcription Factor Family AT1G04360 31.250 6.90e-21 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2453 K10663 - gmx:100804962 366.696