Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2452 ATGATGTTCCATTCTCAGGGTCCTTCGAGACATTGTAGTCTCCTTGCTATCCTGAGTGGTAAATCACGCGACAGTAAGCAAAAGCAGAAGCAGGGTGCTGCTTCTGAGGATCAACCTTCATATCCCTTCCCAGAGCTTTCTTCCTCTGGCCGTCTTGAGGTAAAAGTATTGACCAAACCTACTGCTGATGAACTCGGTCGAGCTATTGAACAACTGCAGCCAGATTTTGTTTACCTGCAAGGGCAGCAGCTAGAAGACCGGGGAGAAATTGGGGCTCTTGTGTGGGAAGATTTTGACCTCTCTGTCCCAGAAGCGATATGTGAATTATTTTCTTCCAAATTGCCTGATACCGTTTATTTGGAAACTCCTAAAGGAGAAAAATTGGCAGAGGCACTCCGTTCTAAGGGAGTTCCTTACACTATCTATTGGAAAAATGAATTTTCAAAGTATGCAGCTTCACATTTTCGTCATGCATTTTTCTCTGTGGCACAGAGTACATCCAGCCATACATGGGATGCTTTCCAGCTTGCTCTTGCATCTTTTAGACTATACTGTATACAAAACAATGTCTTACCTTCTAGCAGCCAGAAGGGTGCTGGTAAGCTTGGGCCACAAATTCTTGGAGATCCTCCGGACATTGATGTTAGTCCGTGTGTAGCAGACATGGAGGAAGAGGAAAGTTCACCTGAGACTATGTCTGCTGTAAAGATATACGATGATGATGTAAACATGAGATTTCTTGTTTGTGGAGTTCGTTGCACATTGGATGCTTGCTTGTTGGGGTCATTAGAGGATGGACTCAATGCTCTTCTATTTACAGAAATACGTGGATGTAAACTTCACAACAGGACAAGTGCTCCGCCTCCACCACTCCAGGCAGGAATGTTCTCACGTGGTGTAGTGACCATGCGATGTGATATATCCACATGTAGTTCTGCTCATATATCACTTTTGGTGTCTGGAAGTGCAGAGGCTTGTTTTAATGATCAGCTTTTGGAGAATCATATTAAAAAAGAGCTCATTGAGAAGACTCAACTTGTTCAGGCCTTTCCTTATCACGAACAAAGTAAACCACCTTCTACTGAGCCACGAAGATCAACCTCTGTAGCCTGTGGGTCTAGTGTGTTTGAGGTTTGTATGCGAGTTCCTGCATGGGCGTCACAGGTTTTGAGACAGCTTGCACCCAATGTGTCATACCGCAGCCTTGTTATGTTGGGAGTTGCTAGTATTCAAGGATTGCCAGTTGCATCTTTTAATAAAGATGATGCTGAACGTCTCTTTTTCTTTTGTACTAGGCAGGGGAAGGAAATCTGTCCTGATGATCCTGTTTTGTCTGGGATTCCTAGTTGGCTAATGCCTCCACCACCCAGGCGGAAAAGGTCTGAACCATGCACTAGAACAAAGCCTATTAATGCTAGTGGCCGGGGAATTGAAGATACTGGAGGCAGTCAGAGACAAAAGTTAAATCCTGCTGCTATGAGGCCAATCCCTCATTCTCATAGACACAAGATTCTCCCCTTCTCTGGATTGTCTGAGGGTGAAAAATATGGAGACCATGGAAAATCAAATCAGCCACTTGCTCCTATTAAGCACAATGTTTCAGGCCATAATTCAGTTACGCATAGGAAATCTGTGTCAAACTCAATTCAGGCTCACCAAATAATTTCTTTGAATCCACTACCAATGAAAAAGCATGGTTGTGACCGAGCTCCAATACGTGCTTGCTCAGAGGAGGAATTTTTGAGGGATGTCATGCAGTTTTTGATCCTTCGAGGTCATACTCGTCTAATTCCACAAGGAGGGCTTGCTGAGTTCCCTGATGCCATTCTGAATGCAAAACGCCTTGACCTGTTCAACTTGTATAGGGAGGTGGTTTCGAGAGGAGGCTTTCATGTTGGGAATGGTATCAATTGGAAAGGACAAGTTTTCTCAAAGATGCGCAATCACACACTGACAAATAGAATGACTGGTGTTGGAAATACACTCAAAAGACATTATGAAACTTATCTCTTGGAATATGAATTAGCTCATGATGATGTAGATGGAGAGTGCTGTTTATTGTGTCACAGTAGTGCAGCAGGTGACTGGGTGAACTGCGGTATATGTGGTGAATGGGCTCATTTTGGCTGTGATAGGCGGCAGGGACTTGGAGCATTTAAGGACTATGCTAAAACTGATGGACTGGAGTACGTTTGTCCTCACTGCAGCATATCAAATTTCAGTAAAAAATCACAGAAAACTGCAAATGGTTATTAA 2256 0.4362 MMFHSQGPSRHCSLLAILSGKSRDSKQKQKQGAASEDQPSYPFPELSSSGRLEVKVLTKPTADELGRAIEQLQPDFVYLQGQQLEDRGEIGALVWEDFDLSVPEAICELFSSKLPDTVYLETPKGEKLAEALRSKGVPYTIYWKNEFSKYAASHFRHAFFSVAQSTSSHTWDAFQLALASFRLYCIQNNVLPSSSQKGAGKLGPQILGDPPDIDVSPCVADMEEEESSPETMSAVKIYDDDVNMRFLVCGVRCTLDACLLGSLEDGLNALLFTEIRGCKLHNRTSAPPPPLQAGMFSRGVVTMRCDISTCSSAHISLLVSGSAEACFNDQLLENHIKKELIEKTQLVQAFPYHEQSKPPSTEPRRSTSVACGSSVFEVCMRVPAWASQVLRQLAPNVSYRSLVMLGVASIQGLPVASFNKDDAERLFFFCTRQGKEICPDDPVLSGIPSWLMPPPPRRKRSEPCTRTKPINASGRGIEDTGGSQRQKLNPAAMRPIPHSHRHKILPFSGLSEGEKYGDHGKSNQPLAPIKHNVSGHNSVTHRKSVSNSIQAHQIISLNPLPMKKHGCDRAPIRACSEEEFLRDVMQFLILRGHTRLIPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFSKKSQKTANGY* 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2452 751 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 751 IPR042293 -
Apr1g2452 751 CDD PHD_ARID4_like 684 735 - -
Apr1g2452 751 SUPERFAMILY ARID-like 575 689 IPR036431 GO:0003677
Apr1g2452 751 CDD ARID 576 674 - -
Apr1g2452 751 MobiDBLite consensus disorder prediction 22 47 - -
Apr1g2452 751 Gene3D - 571 677 IPR036431 GO:0003677
Apr1g2452 751 ProSiteProfiles ARID domain profile. 574 678 IPR001606 GO:0003677
Apr1g2452 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 678 741 IPR013083 -
Apr1g2452 751 SUPERFAMILY FYVE/PHD zinc finger 677 739 IPR011011 -
Apr1g2452 751 Pfam ARID/BRIGHT DNA binding domain 577 674 IPR001606 GO:0003677
Apr1g2452 751 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 4 751 - -
Apr1g2452 751 SMART ARID_2 571 674 - -
Apr1g2452 751 MobiDBLite consensus disorder prediction 448 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2452 Apr-Chr1 34150359 34158959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2452 2 750 ARID Transcription Factor Family AT3G43240 66.401 0.0 999
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Apr1g2452 ARID 9.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2452 - - gmx:100775894 1350.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2452 1 34150359 34158959 Apr1g2452 1 34150359 34158959 ECH