Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2451 ATGTTTCACCCTCAGCCGCCGTCGTCGTCACCGCCGCCGCCGCCGTCACCGATGACCACTCTGGAGTCACCCCTCAACGCCAAAACGACGTCGATCATCAAAAGGCGCAGAACAACCGTTCCTCCTTCCGCCGAAGTTGTTGACGTGGAATCCTTCTGTTTCACGCCAATCTCCGAAAGAGGAGCCACCAAGTCAAACGCCATCTCCGTCGACCAATACGACAACGACAGAAACTTATACCTCTCCATCGCAGCTTCACTCACTCTTTCCACCCCCTCTCACTCCGTCCACGTCATTGACCTTTCCGACACCGATGACGACGACGACGTTCGAATCCTCAAGTTCAAACCCCAAAACGCAGCGGCGTTCGGGAAGCGAAAACGAAACCACAACACCGTCGAAAAGGGCGAGTTTTCCAACACAGCGCCATTCGTTTGCGAAATCTGCACCGACACCAAGACCGCGAGTGACTCCTTCAACATCGCCGGGTGCTGCCACGTGTACTGCAAGGAGTGCGTGGCGACGTACGTGGAGTCGAAGCTTCAAGAAAACGTGGTGAACATCGCGTGCCCTGTGCCGCGATGCAGGGGATTATTGGAGGCGGAGGACTGTCGCACAATTCTTGATCCTGGGGTTTTGGATCGGTGGGGGAAGGCACTGTGCGAGGCTGTGATCGCTGCGGAGGATAAGTTCTATTGTCCCTTCGGGGATTGTTCTGCGTTGTTGATTCGAGATGAGAGAGAGAATATTAGGGAATCGGAGTGTCCCAATTGTAGGAGGGTGTTCTGCGCTTTATGTAGGGTACCCTGGCATCAAGGGATACCCTGCGAGGAGTTTCAGATGCTGAACAGGGACGAGAGGGAGAAGGAAGATATCATGTTGATGAACCTTGCTAGAGAGATGAGGTGGAAGAGGTGCCCCAAGTGTAGGTTTTACGTTGCCAAATCTGAGGGTTGCATGTACATGAAATGCAGGTGTGGAATCGCTTTCTGCTACAACTGTGGAGCTCCGTCCTTAACTTCCTCACATTATTGTGCGTACTGTCGACGCTAA 1053 0.5347 MFHPQPPSSSPPPPPSPMTTLESPLNAKTTSIIKRRRTTVPPSAEVVDVESFCFTPISERGATKSNAISVDQYDNDRNLYLSIAASLTLSTPSHSVHVIDLSDTDDDDDVRILKFKPQNAAAFGKRKRNHNTVEKGEFSNTAPFVCEICTDTKTASDSFNIAGCCHVYCKECVATYVESKLQENVVNIACPVPRCRGLLEAEDCRTILDPGVLDRWGKALCEAVIAAEDKFYCPFGDCSALLIRDERENIRESECPNCRRVFCALCRVPWHQGIPCEEFQMLNRDEREKEDIMLMNLAREMRWKRCPKCRFYVAKSEGCMYMKCRCGIAFCYNCGAPSLTSSHYCAYCRR* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2451 350 MobiDBLite consensus disorder prediction 1 20 - -
Apr1g2451 350 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 47 349 IPR031127 GO:0004842|GO:0016567
Apr1g2451 350 Gene3D - 273 350 - -
Apr1g2451 350 SMART ibrneu5 214 276 IPR002867 -
Apr1g2451 350 SMART ibrneu5 286 348 IPR002867 -
Apr1g2451 350 SUPERFAMILY RING/U-box 143 224 - -
Apr1g2451 350 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 47 349 - -
Apr1g2451 350 Pfam IBR domain, a half RING-finger domain 222 276 IPR002867 -
Apr1g2451 350 ProSiteProfiles Zinc finger RING-type profile. 146 194 IPR001841 -
Apr1g2451 350 ProSitePatterns Zinc finger RING-type signature. 164 173 IPR017907 -
Apr1g2451 350 ProSiteProfiles TRIAD supradomain profile. 142 350 IPR044066 -
Apr1g2451 350 SUPERFAMILY RING/U-box 287 347 - -
Apr1g2451 350 SUPERFAMILY RING/U-box 220 280 - -
Apr1g2451 350 MobiDBLite consensus disorder prediction 1 21 - -
Apr1g2451 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 228 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2451 Apr-Chr1 34146222 34148675 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2451 146 337 C3H Transcription Factor Family AT2G19610 33.168 7.44e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2451 K11975 - gmx:100803898 446.817