Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2450 ATGGGCAACAAGCTCTGTGTTTCTATAAAATCTAAAAATAAGGCCTCAGAGGGAAATGATGAATCTTCTTTCAATTGCTTGGACCTAGAAAGCATAGCGGAATATTTTAGACCCTCTTATGAAGATGACATAAGGGGTACCATACTTTACACCTGCAAAATTTGCTGTGAATCGAAGTCACTAAATGACAGCTTCAGTGTGGAGCCTTGTGGCCACTTTTACTGCTTCACATGCACCGTCAGATACATAGTATCAAAGCTCCAAAACAACGTGTTGATCATTAAGTGTCCTGAGAGAGAGTGCTTTGGGGAGTTGAGTCCTCATGTTTGCAAACCAATTCTACCCACCAACGTGTTAGAGAGGTGGGAAAAAGCTTTGTGTGAATCCGTGATTCCCGAGGAGGAGAGGTTCTATTGTCCTTTCAATGATTGCTCCGCACTGTTGTTGATCAATGATGGTCGAATGGTCATTAGAAACTCAACTTGTCCTCATTGCAAGAGAGCCATTTGTGTTCAGTGTAATGCTCCTTGGCATCAAAAAATAACTTGTCAAAAGTATAAAAAATTGAACGAGAACAAGAACGATGATCTTTTGTTGAATCTCGCCAAGAAAAGAAAGTGGAAACGGTGCCCAAACTGCAAGCATTATGTTGAAAAGAATAATGGCTGTGATTACATGACATGCAGGTTGGTTAATTCCCTCCTCCATGTTCCTTCTCCTACATAA 726 0.4077 MGNKLCVSIKSKNKASEGNDESSFNCLDLESIAEYFRPSYEDDIRGTILYTCKICCESKSLNDSFSVEPCGHFYCFTCTVRYIVSKLQNNVLIIKCPERECFGELSPHVCKPILPTNVLERWEKALCESVIPEEERFYCPFNDCSALLLINDGRMVIRNSTCPHCKRAICVQCNAPWHQKITCQKYKKLNENKNDDLLLNLAKKRKWKRCPNCKHYVEKNNGCDYMTCRLVNSLLHVPSPT* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2450 241 ProSiteProfiles TRIAD supradomain profile. 48 241 IPR044066 -
Apr1g2450 241 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 23 233 - -
Apr1g2450 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 135 IPR013083 -
Apr1g2450 241 SUPERFAMILY RING/U-box 129 188 - -
Apr1g2450 241 SMART ibrneu5 120 183 IPR002867 -
Apr1g2450 241 SUPERFAMILY RING/U-box 50 132 - -
Apr1g2450 241 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 23 233 IPR031127 GO:0004842|GO:0016567
Apr1g2450 241 SUPERFAMILY RING/U-box 194 228 - -
Apr1g2450 241 Gene3D - 180 231 - -
Apr1g2450 241 Pfam IBR domain, a half RING-finger domain 120 183 IPR002867 -
Apr1g2450 241 ProSiteProfiles Zinc finger RING-type profile. 52 97 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2450 Apr-Chr1 34143187 34143912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2450 51 229 C3H Transcription Factor Family AT2G19610 30.890 1.29e-22 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2450 K11975 - rcu:8259039 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2450 1 34143187 34143912 Apr1g2450 1 34143187 34143912 ECH