Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2443 ATGGATTGCGGTGGAGGCTCCAAATTGACTGGAATTAGGCAAATTGTGAGACTAAAGGAAATGCTCCAGAAATGGCAAAGTGTCACTCTAGGCTCAAAAGCTTCCAACCACAATTCAAGTAGTTCTAATCACGCTATTCATGGTGGGGGCGTATCGCCAATAATTAACAAAAGGATAGCGAATGTTATGAATTGTGACTCAGATGAAGATGCTTGCCAAAGTCCTGAACCACTTCCACCACCTGATGTTCCAAAAGGTTACTTGGCAGTGTATGTTGGACCAGAGCTTAGGAGGTTCATCATTCCCACCAGCTACCTTAGCCACTCTCTATTCAAAGTTTTGCTGGAAAAGGCTGCAGATGAATTTGGGTTTGATCAGAGTGGCGGACTCACCATACCATGTGAGATTGAGACCTTCAAATACCTCCTCAAGTGCATGGAGAATGAGCAGAAAGAGCACCTTGATGACAGCGCCCCTGGAAGCTCGGGAACTGTGGAAGAGTAA 504 0.4544 MDCGGGSKLTGIRQIVRLKEMLQKWQSVTLGSKASNHNSSSSNHAIHGGGVSPIINKRIANVMNCDSDEDACQSPEPLPPPDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAADEFGFDQSGGLTIPCEIETFKYLLKCMENEQKEHLDDSAPGSSGTVEE* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2443 167 Pfam Auxin responsive protein 78 145 IPR003676 GO:0009733
Apr1g2443 167 PANTHER BNAA02G05090D PROTEIN 7 165 - -
Apr1g2443 167 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 165 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2443 Apr-Chr1 34076878 34079121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2443 1 158 Calmodulin-binding Proteins AT5G20810 69.182 1.31e-73 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2443 K14488 - gmx:100527570 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2443 1 34076878 34079121 Apr1g2443 1 34076878 34079121 ECH
Apr9g2431 9 31733250 31734151 Apr1g2443 1 34076878 34079121 PCT