Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2438 ATGAAAGTCAAGTCCATGGCACCGCAATTTGTTCTCCTTCTGCTACCTTTGCTTGCTGTTGCTGTTAAAGCACTCGCTTCCAATGCGACACTTAACGAGACTTGTGGTTACCTCGATGCTTCTCTCAATAGAGACACTAATGCACTATGCCCAAGTGGTTGGGTTATTGACCTTAACAAGACCAAGTGCTTTCTCCATGTTGGGAGGCCTCAATCTTGGAATGACTCAGAGACCTGTTGTAGTAAGTATGGTGGACATTTAGTGTCATTGACATTGCTTCAAGAGCTACAGTTTGCTCAGAGTTTATGTGGCAAATCTATAAACAGTTGCTGGATTGGTGGAAGGAGACTCAAATCTACAGCTGGTTATCAGTGGTTGTGGTCTGACAATTCACAGTGGAATAAGTCCATATTTCCTTTGGATGATTTTCCACCAAATTGTACTGGAACTGCACTATCCTGTCATAGGAACAACACAGACAATCTATGTACTGTAATGACTAATAATTCAAAATCTCTCATGAGTGAGAGATGCGACAATCCTCATGCTTCTCTATGTGTGCTTGATATTGCTACAAAATGTAACTATATGCACTGTCACAGAGAATACCTTATCATCCTTGCAGTGGTGAGTGCATTGATACTCTCCACAACATTAGCTGTGGTAGTTTGGCTTCTTATATTTAAGCGGGGCAAGAAAAGAAGGCGGTCAAGAAAACTATCTAATCCAGGAGCTTCTCTTCCATCATGGAAAGTTTTTAGCAAAGAGGAACTAAGGTCTGTTACAAAGAATTTCAGTGAAGGTAACCGTCTTGTTGGGGATACAAAGACTGGTGGTACATACAGTGGGGTTTTATCAGATGGCTCAAGGGTCGCAGTTAAGAGATTAAAGAGGTCAAGCTTTCAGAGGAAAAAAGAGTTCTATTCTGAAATTGGCAGGGTTGCAAGGCTTCGTCATCCAAATCTGGTGGCTGTGATGGGATGCTGCTATGATCACGGTGACCGCTACATTGTTTACGAATTTGTAGCTAATGGGCCTTTAGATAAGTGGCTACATCACATACCAAGGGGAGGTCGCAGTTTAGATTGGGCTATGAGGATGAAAATTGCAACAACACTTGCTCAAGGAATTGCGTTTCTGCATGACAAGGTTAAACCACAAGTTGTGCATCGAGATATACGTGCTAGCAATGTATTGCTGGATGAGGAGTTTGGAGCGCACCTTATGGGTGTTGGTCTGTCCAAGTTTGTGCCATATGAAGTAATGCATGAGAGGACAGTGATGGCAGGTGGAACTTATGGATATCTTGCTCCAGAGTTTGTGTATAGAAACGAGCTTACAACAAAGAGTGATGTTTATAGTTTTGGTGTCCTACTACTTGAAATAGTTAGCGGACGTAGACCTGCACAGGCAGTTGATTCTGTGGGTTGGCAGAGTATATTTGAATGGGCAACGCCACTTGTGCAAGCTCATCGCTATCCTGAGCTCTTGGATCCTCATATAACATCATCCTCTTCTAGTATCATCCCAGAGGCTAGTACCATCCAAAAGGTGGTTGACCTTGTTTATTCTTGCACGCAGCATGTCCCTTCTATGCGCCCTAGAATGTCTCATGTGGTTCACCAGTTGCAACAGTTTGCCCAGCCACCTGCCAAGTAA 1659 0.4322 MKVKSMAPQFVLLLLPLLAVAVKALASNATLNETCGYLDASLNRDTNALCPSGWVIDLNKTKCFLHVGRPQSWNDSETCCSKYGGHLVSLTLLQELQFAQSLCGKSINSCWIGGRRLKSTAGYQWLWSDNSQWNKSIFPLDDFPPNCTGTALSCHRNNTDNLCTVMTNNSKSLMSERCDNPHASLCVLDIATKCNYMHCHREYLIILAVVSALILSTTLAVVVWLLIFKRGKKRRRSRKLSNPGASLPSWKVFSKEELRSVTKNFSEGNRLVGDTKTGGTYSGVLSDGSRVAVKRLKRSSFQRKKEFYSEIGRVARLRHPNLVAVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGAHLMGVGLSKFVPYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLVQAHRYPELLDPHITSSSSSIIPEASTIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQFAQPPAK* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2438 552 SUPERFAMILY C-type lectin-like 43 189 IPR016187 -
Apr1g2438 552 SUPERFAMILY Protein kinase-like (PK-like) 239 543 IPR011009 -
Apr1g2438 552 PANTHER - 2 548 - -
Apr1g2438 552 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 548 - -
Apr1g2438 552 Gene3D Transferase(Phosphotransferase) domain 1 342 548 - -
Apr1g2438 552 SMART CLECT_2 50 187 IPR001304 -
Apr1g2438 552 Pfam Protein tyrosine and serine/threonine kinase 276 543 IPR001245 GO:0004672|GO:0006468
Apr1g2438 552 Gene3D - 21 189 IPR016186 -
Apr1g2438 552 CDD CLECT 62 186 - -
Apr1g2438 552 ProSitePatterns Tyrosine protein kinases specific active-site signature. 388 400 IPR008266 GO:0004672|GO:0006468
Apr1g2438 552 ProSiteProfiles Protein kinase domain profile. 266 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2438 552 SMART tyrkin_6 275 543 IPR020635 GO:0004713|GO:0006468
Apr1g2438 552 ProSiteProfiles C-type lectin domain profile. 59 187 IPR001304 -
Apr1g2438 552 Pfam Lectin C-type domain 70 186 IPR001304 -
Apr1g2438 552 Gene3D Phosphorylase Kinase; domain 1 242 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2438 Apr-Chr1 34003399 34009339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2438 80 549 Receptor kinase-like Gene Family AT1G52310 70.146 0.0 658
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Apr1g2438 PK_Tyr_Ser-Thr 1.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2438 - - vra:106762676 963.755