Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2436 ATGGGGGCGAAGAAGGGTAGCAACAGTGAAAGTGAAGGAGCAAACAATGTTTTTGCGTCTTGCTCCTTCTCCAGCCTTGGCCTTCATCCCACTTTATGTGACCAACTTCGTGAAAGGATGGGGTTTGAAGTTCCAACGTTGGTGCAAGCTCAAGCTATTCCTGTTATTCTCTCCGGGCGTCATGCACTGGTAAATGCTGCAACGGGCACTGGGAAAACTGTTGCGTACCTGGCTCCGATTGTTAATCAGTTGCAGAATTTTGATAATAGAATCCAGCGCACTGATGGAACGTTTGCGTTGGTTCTTGTACCGACGCGGGAGCTATGCTTGCAGGTTTATGAAATTCTTCAGAAGTTATTGCACCGGTTTCACTGGATTGTTCCAGGATACATTATGGGTGGTGAAAATAGATCAAAGGAAAAATCCAGGCTGCGCAAAGGCATATCAATTCTTATAGCAACTCCTGGGCGACTTTTAGATCACTTGAAGAACACATCATCTTTCTTGCACACAAATTTGCGCTGGATAATTTTTGATGAAGCCGATAGGATTTTGGAATTAGGGTTTGGTAAAGATATACAGGAAATACTAGATCTTTTAGGTTCAAGGAAAACTGGGCATGATGACCAAGAGAAAGTTCCAAGGCAGTCTAAAATTCAAAGACAGAATTTGCTATTGTCTGCCACTTTAAATGAGAAAGTGAACCACCTTGCGAAAATTAGTCTAGACAATCCAGTGATGATTGGTCTTGATGGTAAAAAAGTGGAACCAATGTCAACAATTGAAAGCCTTGATCATTCAGAATCTGATGAAGACAGTGAAGAGAAGTATTCTAGTAAAATGCCAACAGTTGCAGATTATAAAGTGCCCACACAGTTGATTCAGAGATACATGAAAGTGCCTTGTGGTTCACGGCTTCCTGTACTTCTTTCAATTCTAAAGCATCTATTTGAAAGGGAACCTTCACAAAAGGTTGTGGTATTCTTTTCAACATGTGATGCAGTAGATTTTCACTATTCATTGTTAAGTGAATTCCAATTCTCTTCTGATCCACAAACAGAAAAAGGGATCAGACAGATGTTTCTTGGATGTAAGACTTTTCGGTTACATGGTAATATGGAACAGGAGGACAGGAGAACCAGTTTTCAGGCCTTTAAAACTGAGAAATCTGCCTTGCTTTTCTCCACTGATGTTTCTGCTAGAGGATTGGATTTTCCAAAGGTTAGATGTATCATACAATATGATTCTCCTGGGGAAGCTACTGAATATGTCCATAGAGTTGGTAGAACTGCTAGGCTGGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAACCAGTTGAAATAGACTATTTACAGGACTTGGAGAAACATGGTGTCTCACTCACAGAGTATCCTCTCCTCAAAACATTGGATTATTTTCCACTGTATGGACACAACAACATAAAGAAGCCTGTTTTCATAGATTCACATCCCTGGATTCTTTCTCTCCAGAAGGCACTTGAAGCCTTCATCATATCCAAGCCCAAGATGGATGAACTTGCCAAGAAGGCATTTTGCTCTTGGGTCCGTGCTTACACAGCCCATCGTGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCATGTAGCAAAAAGCTTCGCATTGAAACAACAACCCTCCTTAGTTGGAAAGTCGTTGCAAAAGCAAACTAAGAAGAGAAAGAGATTTGAGAAGAAAAAAGGGTTGTCCAAAAGGAGAAAAATTGCGAGTGTGACGTAA 1770 0.4096 MGAKKGSNSESEGANNVFASCSFSSLGLHPTLCDQLRERMGFEVPTLVQAQAIPVILSGRHALVNAATGTGKTVAYLAPIVNQLQNFDNRIQRTDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGENRSKEKSRLRKGISILIATPGRLLDHLKNTSSFLHTNLRWIIFDEADRILELGFGKDIQEILDLLGSRKTGHDDQEKVPRQSKIQRQNLLLSATLNEKVNHLAKISLDNPVMIGLDGKKVEPMSTIESLDHSESDEDSEEKYSSKMPTVADYKVPTQLIQRYMKVPCGSRLPVLLSILKHLFEREPSQKVVVFFSTCDAVDFHYSLLSEFQFSSDPQTEKGIRQMFLGCKTFRLHGNMEQEDRRTSFQAFKTEKSALLFSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVSLTEYPLLKTLDYFPLYGHNNIKKPVFIDSHPWILSLQKALEAFIISKPKMDELAKKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGKSLQKQTKKRKRFEKKKGLSKRRKIASVT* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2436 589 Pfam DEAD/DEAH box helicase 47 236 IPR011545 GO:0003676|GO:0005524
Apr1g2436 589 Gene3D - 304 585 IPR027417 -
Apr1g2436 589 SMART ultradead3 41 261 IPR014001 -
Apr1g2436 589 SMART helicmild6 351 434 IPR001650 -
Apr1g2436 589 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 177 185 IPR000629 -
Apr1g2436 589 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 11 586 - -
Apr1g2436 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 455 IPR027417 -
Apr1g2436 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 248 IPR014001 -
Apr1g2436 589 PANTHER RNA HELICASE 11 586 - -
Apr1g2436 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 26 297 IPR014013 GO:0005524
Apr1g2436 589 Pfam Domain of unknown function (DUF4217) 497 557 IPR025313 -
Apr1g2436 589 Pfam Helicase conserved C-terminal domain 311 434 IPR001650 -
Apr1g2436 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 308 481 IPR001650 -
Apr1g2436 589 Gene3D - 2 251 IPR027417 -
Apr1g2436 589 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 21 50 IPR014014 GO:0003724
Apr1g2436 589 SMART DUF4217_3 495 560 IPR025313 -
Apr1g2436 589 MobiDBLite consensus disorder prediction 564 589 - -
Apr1g2436 589 MobiDBLite consensus disorder prediction 561 589 - -
Apr1g2436 589 CDD SF2_C_DEAD 293 443 - -
Apr1g2436 589 CDD DEADc_DDX31 32 249 - -
Apr1g2436 589 MobiDBLite consensus disorder prediction 261 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2436 Apr-Chr1 33991181 33998780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2436 1 465 Eukaryotic Initiation Factors Gene Family AT1G72730 25.054 2.72e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2436 K14806 - gmx:100805157 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2436 1 33991181 33998780 Apr1g2436 1 33991181 33998780 ECH