Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2435 ATGAAGGCTCCTCCCAATGGTTACTTGCCTAATTCTGGCGAAGGGGAAAGAAAGACCATCAATTCAGAGTTATGGCATGCCTGTGCTGGACCATTGGTTTCCTTACCTCCTGCTGGAAGTCTCGTGGTTTACTTCCCTCAGGGACACAGTGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCTGACTTCATACCCAGTTACCCTAACCTTCCGTCCAAGTTGATTTGCATGCTTCACAATGTTGCCTTGCATGCTGATCCTGAAACTGATGAGGTCTATGCACAGATGACCCTTCAACCTGTAAATAAATATGACAAGGAAGCAATACTGGCATCAGACATGGGTCTAAAACAAAGCCAACAACCTACTGAATTCTTTTGCAAAACCCTTACTGCCAGTGACACCAGCACTCATGGTGGATTTTCGGTGCCTCGTAGAGCAGCTGAAAAAATATTCCCACCTTTGGATTTTTCAATGCAACCTCCAGCTCAGGAGATCGTTGCCAAAGATTTGCATGACAATACATGGACATTTAGACATATTTATCGAGGTCAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTATTTGTTAGCACAAAAAGACTGTTTGCTGGAGATTCTGTCCTTTTCATCAGAGATGAAAAACAGCAACTCCTTTTAGGGATAAAGCGAGCAAATAGACAGCAACCAGCATTATCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCAGCTTCAAATAACAGTCCATTCACTATATTTTATAATCCAAGGGCCAGCCCCTCTGAATTTGTAATTCCATTGGCCAAGTATAATAAAGCCTTGTACAATCAAGTTTCTCTTGGAATGAGATTCAGAATGATGTTTGAGACTGAGGAGTCAGGAGTACGTAGATATATGGGTACAATTACGGGGATCAGTGACTTGGATCCTGTCAGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCAAGCAGAGTTTCGATTTGGGATATTGAACCTGTAGTAACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCCAAATTCCCCAAACAACCAGGAATGCCAGAAGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGAGATGACCTTGGCATGAAGGATGCCTCAAGTTCAATCTTCCCTGGTTTGAGTTTAGTGCAATGGATGAGCATGCAGCAGAATAATCAGTTTTCTGCTGCTCAATCTGGTTTTATACCCCCATCCATGCTTTCATCTAATACACTTCATGGTAACCTTAACACTGATGATCCATCCAAGTTATTGAACTTTCAAGCCCCTGTCCTTACTGCTCAAAATCTTCAATTTAACAAACCTAATTTACCAAACCAAGTGAACCAATTGCAACAGTCCCCAACATCATGGCCTCCGCAGCAGCAGCAGCAGCAACAGCAGAAGCTGCAATCATTGTTGCAAACACCATTAAACCAGCTCCAGCAGCAGCAGCAGCAACAGCAAGCACAGCAGCCACAACAACCACAACAGCAGCAGCAACAACAACAACAGTCGTGTCAACAGACCATTATGAATAATGGAGCAGTTGCTGCTAACCAGATTCCAAATCAGTGTGTACAGTCACCAGTAACTTACTCACAGTTTCAGCAACAGCAATTACTCCCAGGAAGTATATCACCCCAACAAAGTTTCCAATCAGCTGGTAAGAATCAATTGCTAATGACATCCTTACCTCAAGACTCTCAGTTTCAGCAACAGATAGACCAGCAAGCTAGTCTCTTACAGAGGCAGCAGCAGCAACAGACACAGTTACAACAGTCTCCATTGCAGTTATTGCAACAAAGCCTGTCACAAAGGGCGCCACAGCAACCACAGATGACTCAAGTGTCGCAGCAAAATACCTCAGAGCAGCAACCACAGTTACAGTTCCTACAGAAATTGCAGCAGCAGCAACAACAACAACAGCAACTCCTTTCCACTTCTAGCTCACTTTTGCAGTCTCAGCTTCTAGAGCAACAAAATACTCCCCAACAGAACCAGCAGTTACCACAGCTTCCTGTTTCACAGCATCAGCCTCAACAGCTTGGCAACAGTGGATTCTCAATGGAGAAGCTTCTAAACGGCAATAACTTTGCTTCTGCAGCTCTGATGCAAACACAGCAGTTTCCTGTGAATCAACCTCATCATGCTCAAAAATCGCTTACTAATACCAGAGCTCTCTCTACTCTTACAGATGGAGATGCCCCCTCATGCTCAACTTCACCATCTACTAATAACTGCCAGGTATCTACGCCAAACCTCCTGAAAAGAAATCAACAAGTAACAGCTACATTAGGAGGACCTTCAGTAGTTGAACCCACCAATAACCTGATGCAAGAGCTTCAAAGCAAGTCTGAAATGCAGATCAAACATGAAGTACCCAGTGTAAGAGGACCTGATCAGCTAAAGTATAAAGGGACAATGGCTGATCAGCTGGAAACTTCTTCTGGAACATCTTATTGTATTGATCCTAATAACATCCACCAGAACTTCCCACTTCCAAACTTCTGCATGGATGGGGATGTCCAATCACACCCAAGAAATAATCTACCATTTGGATCAAATCTTGATGGATTGACACCTGATACTTTGCTCTCAAGGGGGTATGATTCTCAAAAAGATCTTCAAAACTTGCTGTCCAATTATGGTAGTGCTCCAAGAGACATTGAAACTGAGCTGTCTACTGCTGCCATTAGTTCGCAGCCATTTGGAGTGCCAAACATGCCTTTTAAGCCTGGATGCTCTAGTGATATTGCCATCAATGATACTGGGGTTTTGAATAACGGTTTGTGGGCTAATCAGACTCAGAGGATGCGAACTTACACTAAGGTTCAAAAATGTGGTTCTGTCGGAAGATGTATTGATGTCACTCGTTACAAGGGATATGATGAACTCCGGCATGATTTGGCTCGGATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCAAAGGACTGAGTGGAAACTGGTCTATGTGGATCATGAAAACGACATTCTTCTTGTCGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTTCAGCAAATGAGCTTGGATGGGGATTTAGGTCATGTTCCAATTCCCAACCAAGCTTGTAGTGGGACAGATAATGGCAATGCATGGAGGGGACAGTATGAGGATAACTCTGCAGCCTCGTTTAATAGATAA 3306 0.4377 MKAPPNGYLPNSGEGERKTINSELWHACAGPLVSLPPAGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAILASDMGLKQSQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKALYNQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESDIENAFKRAMPWLGDDLGMKDASSSIFPGLSLVQWMSMQQNNQFSAAQSGFIPPSMLSSNTLHGNLNTDDPSKLLNFQAPVLTAQNLQFNKPNLPNQVNQLQQSPTSWPPQQQQQQQQKLQSLLQTPLNQLQQQQQQQQAQQPQQPQQQQQQQQQSCQQTIMNNGAVAANQIPNQCVQSPVTYSQFQQQQLLPGSISPQQSFQSAGKNQLLMTSLPQDSQFQQQIDQQASLLQRQQQQQTQLQQSPLQLLQQSLSQRAPQQPQMTQVSQQNTSEQQPQLQFLQKLQQQQQQQQQLLSTSSSLLQSQLLEQQNTPQQNQQLPQLPVSQHQPQQLGNSGFSMEKLLNGNNFASAALMQTQQFPVNQPHHAQKSLTNTRALSTLTDGDAPSCSTSPSTNNCQVSTPNLLKRNQQVTATLGGPSVVEPTNNLMQELQSKSEMQIKHEVPSVRGPDQLKYKGTMADQLETSSGTSYCIDPNNIHQNFPLPNFCMDGDVQSHPRNNLPFGSNLDGLTPDTLLSRGYDSQKDLQNLLSNYGSAPRDIETELSTAAISSQPFGVPNMPFKPGCSSDIAINDTGVLNNGLWANQTQRMRTYTKVQKCGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVPIPNQACSGTDNGNAWRGQYEDNSAASFNR* 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2435 1101 MobiDBLite consensus disorder prediction 1079 1101 - -
Apr1g2435 1101 MobiDBLite consensus disorder prediction 475 504 - -
Apr1g2435 1101 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Apr1g2435 1101 CDD B3_DNA 125 217 IPR003340 GO:0003677
Apr1g2435 1101 Gene3D - 969 1063 - -
Apr1g2435 1101 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Apr1g2435 1101 SMART B3_2 126 228 IPR003340 GO:0003677
Apr1g2435 1101 MobiDBLite consensus disorder prediction 637 656 - -
Apr1g2435 1101 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Apr1g2435 1101 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr1g2435 1101 Gene3D - 123 227 IPR015300 -
Apr1g2435 1101 Pfam AUX/IAA family 971 1060 IPR033389 -
Apr1g2435 1101 MobiDBLite consensus disorder prediction 693 724 - -
Apr1g2435 1101 ProSiteProfiles PB1 domain profile. 974 1067 IPR000270 GO:0005515
Apr1g2435 1101 SUPERFAMILY CAD & PB1 domains 988 1052 - -
Apr1g2435 1101 Gene3D - 289 360 - -
Apr1g2435 1101 PANTHER AUXIN RESPONSE FACTOR 19 1 1089 - -
Apr1g2435 1101 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1089 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2435 Apr-Chr1 33953524 33962452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2435 1 1101 B3 DNA Binding Superfamily AT1G19220 64.298 0.0 1255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr1g2435 AUX_IAA 2.4e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2435 - K14486 gmx:100816054 1534.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2435 1 33953524 33962452 Apr1g2435 1 33953524 33962452 ECH
Apr9g2440 9 31808628 31816364 Apr1g2435 1 33953524 33962452 PCT