Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2433 ATGGTGAAGTCGAGCGTGGAAAAAAAACCTGCGGCGGAGCGAAACGGCTCGTCGTATAGAGGTGTAAGGAAGAGGAAGTGGGGAAAATATGTGTCTGAAATTAGGCTTCCCAATAGTCGACAGAGGATTTGGTTGGGTTCCTACGACACCGCCGAGAAAGCGGCGCGTGCCTTCGACGCCGCCATGTTCTGCTTACGTGGCAGCGGCGCGAGGTTTAATTTCCCGACTGACCCGCCGAACATCGCCGGCGGAAGGTCCATGACTCCCTCTCAAATTCAGATCGCCGCGGCCCGTTTCGCGAATTCGGAGCCTCGAAAAGAATATTCGGGTCCATCCGTTTCTACACCGATGGAGTGTTCTTCTGAGGAGGAGGAGGAGGAGGAGGGGATGGCGTCGTTGCCTATAGAGTCGCCGTCGCCTTCAGAGGTGAAGGTGCAAACCGACAGCGACGCCACGCAAAACGGGTCGTTTTCGGATTTGTTTTCCGCAATCGGGACGGGTCATTTCGAACCCGAATATTGTGTTTTTCCGGGTTTCGATGAGTTTAGTAGTGACTTCTATGTGCCGGAGCTGCCAAGTTTTGATTATGAAGAGAACTTGGATGGGTTGGTTATTCTGGACTCGAACTTGTGGAACTTCTAA 642 0.5296 MVKSSVEKKPAAERNGSSYRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDTAEKAARAFDAAMFCLRGSGARFNFPTDPPNIAGGRSMTPSQIQIAAARFANSEPRKEYSGPSVSTPMECSSEEEEEEEGMASLPIESPSPSEVKVQTDSDATQNGSFSDLFSAIGTGHFEPEYCVFPGFDEFSSDFYVPELPSFDYEENLDGLVILDSNLWNF* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2433 213 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Apr1g2433 213 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Apr1g2433 213 MobiDBLite consensus disorder prediction 101 151 - -
Apr1g2433 213 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Apr1g2433 213 MobiDBLite consensus disorder prediction 1 21 - -
Apr1g2433 213 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Apr1g2433 213 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 3 213 - -
Apr1g2433 213 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Apr1g2433 213 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Apr1g2433 213 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Apr1g2433 213 CDD AP2 17 77 IPR001471 GO:0003700|GO:0006355
Apr1g2433 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2433 Apr-Chr1 33939856 33942064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2433 17 213 AP2-EREBP Transcription Factor Family AT1G19210 46.377 8.22e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr1g2433 AP2 9.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2433 - - gmx:100813688 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2433 1 33939856 33942064 Apr1g2433 1 33939856 33942064 ECH