Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2431 ATGTCCACCTCGTCGGACTATTCTGAGTTTTCCGGCCAGAAACCGGCCAAGTCGCCGGAGAAATCGACTTTCTCTCAGACTTGTAGTTTATTGAGTCAATACATAAAGGAGAAGGGTAGCTTCGGAGATCTCACCCTCGGAATGACATGCAACACCGAAGCTAGTGGGTCACCTGAGACATCTTGTCAATCTGCTACAACCATGAACTTGTTTCCTACCAAGGAAAACAACGTGACACCAAAGAACCTGACAGCTATGGATTTGCTCTCTCCACAAGCTTCCTTTCGACCAGCTGAAGAGATTCCAACCTTAATCAATTCCAGTGCTATAAAGTCTGTGAGCAAGGGGTCTAAAGCTGCACAATTGACAATCTTTTATGGTGGACAAGTTATTGTGTTTGATGATTTTCCTGCTGACAAGGCAAACGAGCTTATGTCCTTTGCTAACAAAGGGATCTCCCAAAGCCAGAACAATTCTGTTTACACTTACACACGCAGCCAACCTTCATTTCCTCCTAATTTGATTAGAACTTCTGAGTCAAGTGCTCCAGTTATTCCCAGTGTGAAGATTGCTGGGACCAACTCAATTCGTGAACATGCTCAAGCTTCATCCAGTCCTGTTGTTTGTGATCTGCCAATTGCTAGAAAAGCTTCTCTTCATCGGTTCCTTGAGAAGAGAAAGGATAGAATTGCTTCCAAAGCGCCATATCAAACAACAAATGGGTCTGCAAATAAGGCAGCTGAATCCATGTCATGGCTTGTGTTGGGTGCTGCCGCACCTCAAATCTGA 789 0.4461 MSTSSDYSEFSGQKPAKSPEKSTFSQTCSLLSQYIKEKGSFGDLTLGMTCNTEASGSPETSCQSATTMNLFPTKENNVTPKNLTAMDLLSPQASFRPAEEIPTLINSSAIKSVSKGSKAAQLTIFYGGQVIVFDDFPADKANELMSFANKGISQSQNNSVYTYTRSQPSFPPNLIRTSESSAPVIPSVKIAGTNSIREHAQASSSPVVCDLPIARKASLHRFLEKRKDRIASKAPYQTTNGSANKAAESMSWLVLGAAAPQI* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2431 262 ProSiteProfiles Tify domain profile. 115 150 IPR010399 -
Apr1g2431 262 Pfam tify domain 118 149 IPR010399 -
Apr1g2431 262 Pfam Jas motif 212 237 IPR018467 -
Apr1g2431 262 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 17 256 IPR040390 -
Apr1g2431 262 PANTHER PROTEIN TIFY 10A 17 256 - -
Apr1g2431 262 MobiDBLite consensus disorder prediction 1 22 - -
Apr1g2431 262 SMART tify_2 115 150 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2431 Apr-Chr1 33917408 33920049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2431 1 257 Tify Gene Family AT1G19180 42.379 4.65e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Apr1g2431 tify 3.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2431 K13464 - gmx:100801449 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2431 1 33917408 33920049 Apr1g2431 1 33917408 33920049 ECH
Apr9g2445 9 31846676 31849082 Apr1g2431 1 33917408 33920049 PCT