Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2428 ATGGCCGCTGTTCATGTCCTTTTCCCTCTCTACCTCTTCCTCTCCCTTTCCCTCTCTTCCTCATTGGAAACCCAATCCCTCCTTAAACTGAAACAATCCTTCACCAACGCCGACCAATCCCTCTCCTCATGGATCCCCAACGTGTCCCCTTGCTCTGGCCCCTGGCTTGGTGTCGTTTGCTTCAACAACATCATCACGGGCCTTCACCTCTCCAATTTGGGCTTATCGGGCCGAATCGACGTGGATGCTCTATCTGAGATTCGCGGCCTTCGAACCCTTAGCTTCGTCAACAACTCATTTTCAGGCCCAATCCCAGAGTTCCACAAACTGGGGACCATCAAATCCCTCCTCCTGACCCAAAATGATTTCTCCGGGCCCATTCCTTCTAACTTATTTTCCTCCTTAAATTCTCTCAAGAAATTGTGGCTCTCTGACAACAATTTCTCATCCAACATCCCCGATTCCTTAACCCAACTCGAACTCTTAAAAGAATTGCACCTTGAAAACAACCAATTCTCAGGCCCAATCCCGCAGTTCAAGCAAGACCTGTCATCATTCGACGTCTCCAACAACCACCTCGTAGGCCCAATTCCCGACAGCTTAAGGAAGTTTAGTGCCACGTCATTTACCAGAAACGATGGGCTCTGCGGGAAGCCTCTGGACCAGAGTTGTGACGATTCATCTTCTTTTTATTCATTGCCGAATAATGATAAGAATGACAGTGGATATGGGTCGAGTTGGGCTATTAAGGTGATAGTTATATTGGTGTTGGCGGTTGTTGCGGCGGTTATTTTTCTATTCACCAAGTCGAGGAAGGCAAAGGAAGATGATTTCAGTGTGGTGAGTAGGAACAGCGAAGTGGAAGAGGTGGTGCATGTGAACGTGAGTAGTGTGAAGCCAAGTGCACCTGTGAGGAAGGAATCGAGGAGAGGGGTTTCAAAGAGTGGGGGTATTGGAGATATTGTGATGGTCAATGAGGAGAGAGGAGTATTTGGGTTGCAAGATTTGATGAAAGCTGCTGCCGAAGTTTTGGGGAATGGAGGGTTGGGATCGGCTTATAAGGCTTCAATGGCCAATGGGTTGTGTGTTGTTGTGAAAAGGATGAGAGAGATGAATAAGATGGGGAAAGATGTTTTTGACGCAGAGATGAGACAGTTTGGGAGGATTAGACACCAAAATGTTTTGTCACCTTTGGCTTATCATTACCGTAGAGAGGAGAAGCTTTTCATCACTGAGTACATGCCTAAAGGAAGCTTGTTATATGTCTTGCATGGTGATAGAGGACAATGCCATTCTGAATTGAATTGGTCTACACGTTTGAAGATTGCTAAGGGAATTGCAAGAGGGTTGGGCTTCCTTTGCACTGAATTTTCTACCTATGACTTGCCCCATGGGAATCTCAAGTCCAGCAATGTTCTACTAACTAATGATTATGACCCTCTCTTAAGTGACTATGCTTTTCATCCAATAATAAACCCAAGTGTTGCTGTGCAAGCATTGTTTGCCTATAAAACCCCAGATTACATACAATGCCAGAAAGTGTCAAAGAAAACTGATGTTTATTGCCTTGGAATCATCATTCTTGAAATTGTCACTGGGAAGTTCCCTTCTCAGTATCATAGCAACGGCAAGGGTGGGACTGATGTTGTGCAATGGGTCCTCACAGCAATATCTGAGAAACGAGAAGCAGAATTGATTGATCCAGAGTTACAAAACAATACAAACTCACGCAATCAAATGTTGCAACTTCTCCAAATAGGTGCTGCTTGCACAGAAAGCAACCCTGACCAAAGACTACCCATGAAAGAAGCTATTAGACGGATAGAGGAAGTACAAGTTTAA 1842 0.4506 MAAVHVLFPLYLFLSLSLSSSLETQSLLKLKQSFTNADQSLSSWIPNVSPCSGPWLGVVCFNNIITGLHLSNLGLSGRIDVDALSEIRGLRTLSFVNNSFSGPIPEFHKLGTIKSLLLTQNDFSGPIPSNLFSSLNSLKKLWLSDNNFSSNIPDSLTQLELLKELHLENNQFSGPIPQFKQDLSSFDVSNNHLVGPIPDSLRKFSATSFTRNDGLCGKPLDQSCDDSSSFYSLPNNDKNDSGYGSSWAIKVIVILVLAVVAAVIFLFTKSRKAKEDDFSVVSRNSEVEEVVHVNVSSVKPSAPVRKESRRGVSKSGGIGDIVMVNEERGVFGLQDLMKAAAEVLGNGGLGSAYKASMANGLCVVVKRMREMNKMGKDVFDAEMRQFGRIRHQNVLSPLAYHYRREEKLFITEYMPKGSLLYVLHGDRGQCHSELNWSTRLKIAKGIARGLGFLCTEFSTYDLPHGNLKSSNVLLTNDYDPLLSDYAFHPIINPSVAVQALFAYKTPDYIQCQKVSKKTDVYCLGIIILEIVTGKFPSQYHSNGKGGTDVVQWVLTAISEKREAELIDPELQNNTNSRNQMLQLLQIGAACTESNPDQRLPMKEAIRRIEEVQV* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2428 613 SUPERFAMILY L domain-like 28 204 - -
Apr1g2428 613 Pfam Leucine rich repeat N-terminal domain 23 60 IPR013210 -
Apr1g2428 613 Pfam Protein kinase domain 342 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2428 613 CDD STKc_IRAK 344 610 - -
Apr1g2428 613 ProSiteProfiles Protein kinase domain profile. 338 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2428 613 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 5 613 - -
Apr1g2428 613 Gene3D Ribonuclease Inhibitor 132 181 IPR032675 -
Apr1g2428 613 Gene3D Ribonuclease Inhibitor 22 131 IPR032675 -
Apr1g2428 613 PANTHER LRR RECEPTOR-LIKE KINASE 5 613 - -
Apr1g2428 613 Gene3D Phosphorylase Kinase; domain 1 331 413 - -
Apr1g2428 613 SUPERFAMILY Protein kinase-like (PK-like) 342 608 IPR011009 -
Apr1g2428 613 Gene3D Ribonuclease Inhibitor 182 228 IPR032675 -
Apr1g2428 613 Gene3D Transferase(Phosphotransferase) domain 1 414 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2428 Apr-Chr1 33892339 33895229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2428 6 613 Receptor kinase-like Gene Family AT3G42880 50.472 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Apr1g2428 Pkinase 3.9e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2428 - - gmx:100790660 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2428 1 33892339 33895229 Apr1g2428 1 33892339 33895229 ECH
Apr9g2447 9 31863155 31865253 Apr1g2428 1 33892339 33895229 PCT