Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2422 ATGATATCTGAGTCCAAGGAAGTTGCAGCCACCAGCGACACACTCCAGTCCATATGCTACAAGCGCGGTTCCCTTCAGCTTCTTGATCAGAGAAAACTCCCTCTACAAACAGTTCACTTGGACATTCGGGATTCAACCGATGGCTGGAATGCAATACGGGATATGGTGGTCCGGGGAGCACCTGCTATTGCAATTGCAGCAGCACTCTCTTTGGCTGTGGAGGTGTTCAATTTAGATGATTTTAATGGATCAGCTGGTGATGCTGTTTCCTTCATCCAGAAGAAATTAGAATATCTTGTTTCAAGTCGGCCAACTGCAGTGAACCTATCAGATGCTGTAACAAAACTCAAAGAAGTCATATCTAACGCTGCTGTTACCACTTCAGCAGCCAAGAGTATTTTCCAGGCTTATGTAGAAGCTGCCGAAGTTATGCTTGAGGACGATGTTGCCTCAAATAGAGCAATTGGTTCTTATGGAGCTAGTTATATTCAACAACAAACAGAGAGACAGAAGCTTTCTGTTTTGACTCATTGCAATACTGGAAGTCTGGCCACAGCTGGATATGGTACTGCTTTGGGTGTGATACGTGCACTTCACAGTGGAGGAGTTTTAGAAAGGGCTTATTGCACAGAAACACGCCCTTTCAATCAAGGATCTAGACTTACTGCCTTTGAGCTGGTGCATGAGAAAATACCAGGAACTCTTATAGCAGATTCTGCTGCAGCTGCATTAATGAAAGAGGGCCGTGTGGATGTTGTTGTTGTTGGGGCAGATCGCATTGCATCAAATGGTGACACAGCCAACAAAATTGGAACCTACAGTGTTGCCTTGTGTGCGAAGTTTCATAATGTACCCTTTTATGTTGCTGCCCCCCTGACTTCCATTGATCTATCACTTTCTTCTGGACAAGAAATTGTCATTGAGGAGAGATCTCCCAAGGAATTGTTGAACACGCACGGAGGACTTGGAGAGCAGATCGCTGCCTCAGGAATTTCCGTATGGAACCCAGCATTTGATGTTACACCTGCTAATCTTATAGCTGGGATCATCACTGAGAAGGGTGTCATTACCAAGACATCTGCTGGTGATGCTTTTGACATTAAAGCTTTCATACAGAAAACAAGTTGA 1128 0.4459 MISESKEVAATSDTLQSICYKRGSLQLLDQRKLPLQTVHLDIRDSTDGWNAIRDMVVRGAPAIAIAAALSLAVEVFNLDDFNGSAGDAVSFIQKKLEYLVSSRPTAVNLSDAVTKLKEVISNAAVTTSAAKSIFQAYVEAAEVMLEDDVASNRAIGSYGASYIQQQTERQKLSVLTHCNTGSLATAGYGTALGVIRALHSGGVLERAYCTETRPFNQGSRLTAFELVHEKIPGTLIADSAAAALMKEGRVDVVVVGADRIASNGDTANKIGTYSVALCAKFHNVPFYVAAPLTSIDLSLSSGQEIVIEERSPKELLNTHGGLGEQIAASGISVWNPAFDVTPANLIAGIITEKGVITKTSAGDAFDIKAFIQKTS* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2422 375 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 13 372 - -
Apr1g2422 375 TIGRFAM salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 16 358 IPR005251 -
Apr1g2422 375 Pfam Initiation factor 2 subunit family 57 357 IPR000649 GO:0044237
Apr1g2422 375 Gene3D - 13 204 IPR027363 -
Apr1g2422 375 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 15 367 IPR005251 -
Apr1g2422 375 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 13 372 - -
Apr1g2422 375 Gene3D - 205 370 IPR042529 -
Apr1g2422 375 TIGRFAM eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 43 358 IPR011559 GO:0044249
Apr1g2422 375 SUPERFAMILY NagB/RpiA/CoA transferase-like 13 360 IPR037171 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2422 54 373 Eukaryotic Initiation Factors Gene Family AT2G05830 78.816 7.40e-177 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2422 K08963 - gmx:100799311 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2422 1 33833042 33837433 Apr1g2422 1 33833042 33837433 ECH