Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2421 ATGGAGATGCAGTTTCAGTTTGTCCCAATTGGAAGAACTCTCCGGGAAGAAGAAAAACCCACTAACGGCACCGCTCGCGAAACCCTTCGATCAAAGGTTGGAATCGAAATGCAGAAGAAGTTGCCATTGCTACTGAACGACGCCAATGCGGACAAAACGAAGAAAAAGGTATTGAGTAGCAAGGAAGCGTTGGTGAAGCTTCTAAGGTGGCATTTTGGTTACCCTGATTTTAGGGGCATGCAATTGGACGCTATTCAGGCCGTGCTCTCAGGGAAAGATTGTTTTTGCCTTATGCCAACTGGAGGAGGCAAGTCGATGTGTTATCAGATTCCTGCATTGGCAAAAACAGGAATTGTGCTTGTTGTTTGTCCTTTAATAGCCTTAATGGAAAATCAAGTAATGGCATTAAAGGAGAGAGGAATTGCTGCAGAATTTCTCTCCTCAACAAAAACGACAGATGCAAAAGTAAAGATTCATGAGGACCTTGATTCTGGAAAACCATCTACAAGGCTGCTATATGTGACTCCAGAGTTGATAGCAACACCAGGTTTTATGTCAAAGCTGAAAAAGATTTATACCAGGGGTTTGCTAAGTCTCATTGCCATAGATGAGGCGCATTGCATCTCAAGTTGGGGTCATGATTTCAGACCTAGTTACCGTAAGCTTTCATCTTTGAGGAGCCACCTACCAGATGTACCAATATTAGCTCTGACTGCCACAGCTGTGCCTAAGGTCCAGAAGGATGTAGTTGAATCCTTGCAGATGCAAAATCCATTAATACTTAAGTCTTCTTTTAATCGTCCTAATATATATTATGAAGTTAGATACAAAGATCTATTGGATAATGCTTATGCTGATTTATCTAATACACTCAAATCTATGGGAGAAATCTGTGCAATAGTTTACTGCCTTGAGCGATCGATGTGTGATGACTTGTCAACTCATCTATCCCAGAGTGGCATTTCATGTGCTGCTTATCATGCAGGACTGAATAATAAAATGCGAACTTCTGTGTTAGATGATTGGATTTCTTCCAAGATAAAAGTTGTTGTTGCCACTGTTGCTTTTGGAATGGGCATTGATAGAAAGGATGTCAGAATTGTGTGCCACTTCAATATTCCCAAGTCAATGGAAGCATTCTATCAGGAGTCAGGCAGAGCAGGACGTGATCAATTGCCATCTACTAGTCTGTTGTACTATGGGATAGATGATCGCAAAAGAATGGAATTTATATTAAGCAACTCAGGGAGCAAGAAGTTACAACCATCTAATTCACAAGAGTCGTTCAGAAAGTCCCTGATTGCTTTCAATCAGATGGTTGAATATTGTGAAGGATCTGGATGTCGTAGAAAAAGAATTCTTGAGAGTTTTGGGGAGCAGGTAACGACATCACTATGTGGAAAAACATGTGATGCCTGCAGCCATCCAAACTTAATTGCCAGATATTTGGAGGATCTCACAACTGCTTGTGCACTACACCAGAAAAATGGTTCTTCTCGAGTTTTTATCACCAGATCCACTGATGCAATTGATGGAGAACGGTTATCTGAATTCTGGAATCGGGATGAGGAAGCAAGTGGATCAGAGGAAGATATATCTGACTCAGATGGTGATGGTAATGAGGTTGTCAACAACCTAGCCCAGTCAAAGCTTCAATCCAGATTGGGGGTAAATGAAAAGCTTGCTTTGTTACAGCAGGCGGAAGAAAACTTCTATCGAAATAAGAACACAGAAAGACAGAGCAATAAAGTTGACAGAAATGCTATTTCTGATACAATGAGAGGATCAAGCAGACAAAGGTTACAAAATGCTCTAATAAAGGCTCAGCAACGGCTTGACAACTTCAAGGTTGAACCAGAAACATCAGCATCTTTTCTTGAAGATGAATGCTACAAGAAATATGGCAAGGTTGGTAAATCATTCTATTACTCACAAGTGGCAAGTACTGTAAGGTGGGTGGCAACTGCAAGTTCTATTGATCTGAAGAACCGACTTTGTGCAATTAATGCCTCCACCTCAACGAATGTCTTGTCTGAAGCTGAAGAGCCCCTCACACCGCCACCTGCTTTAGATCCTTGCGCAAAAGAAGATACTAGCAATGAACTCTCACGCAATGCTAGATCAGAAACTTCCCCGTGTGTTGTGCCTATGGAAAGTTCTTTTAATACCAAGTTGCCACAAATACCATCCTTCTCTGAATTTGTAAATAGTAGGAAAACCGAAGGGGGCCAATTAGATGACACAAAAAAGCATTCATCAAGCGTCGAAAAGAGGATGAGGATACAGTAG 2289 0.4133 MEMQFQFVPIGRTLREEEKPTNGTARETLRSKVGIEMQKKLPLLLNDANADKTKKKVLSSKEALVKLLRWHFGYPDFRGMQLDAIQAVLSGKDCFCLMPTGGGKSMCYQIPALAKTGIVLVVCPLIALMENQVMALKERGIAAEFLSSTKTTDAKVKIHEDLDSGKPSTRLLYVTPELIATPGFMSKLKKIYTRGLLSLIAIDEAHCISSWGHDFRPSYRKLSSLRSHLPDVPILALTATAVPKVQKDVVESLQMQNPLILKSSFNRPNIYYEVRYKDLLDNAYADLSNTLKSMGEICAIVYCLERSMCDDLSTHLSQSGISCAAYHAGLNNKMRTSVLDDWISSKIKVVVATVAFGMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGIDDRKRMEFILSNSGSKKLQPSNSQESFRKSLIAFNQMVEYCEGSGCRRKRILESFGEQVTTSLCGKTCDACSHPNLIARYLEDLTTACALHQKNGSSRVFITRSTDAIDGERLSEFWNRDEEASGSEEDISDSDGDGNEVVNNLAQSKLQSRLGVNEKLALLQQAEENFYRNKNTERQSNKVDRNAISDTMRGSSRQRLQNALIKAQQRLDNFKVEPETSASFLEDECYKKYGKVGKSFYYSQVASTVRWVATASSIDLKNRLCAINASTSTNVLSEAEEPLTPPPALDPCAKEDTSNELSRNARSETSPCVVPMESSFNTKLPQIPSFSEFVNSRKTEGGQLDDTKKHSSSVEKRMRIQ* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2421 762 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 67 477 IPR004589 GO:0004386|GO:0006310
Apr1g2421 762 Pfam Helicase conserved C-terminal domain 296 389 IPR001650 -
Apr1g2421 762 SMART ultradead3 73 275 IPR014001 -
Apr1g2421 762 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 290 433 IPR001650 -
Apr1g2421 762 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 85 259 IPR014001 -
Apr1g2421 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 411 IPR027417 -
Apr1g2421 762 Pfam RecQ zinc-binding 404 473 IPR032284 -
Apr1g2421 762 Gene3D - 267 492 IPR027417 -
Apr1g2421 762 MobiDBLite consensus disorder prediction 573 597 - -
Apr1g2421 762 CDD DEXHc_RecQ 66 266 - -
Apr1g2421 762 Gene3D - 39 266 IPR027417 -
Apr1g2421 762 PANTHER DNA HELICASE RECQ FAMILY MEMBER 49 746 - -
Apr1g2421 762 CDD SF2_C_RecQ 267 400 - -
Apr1g2421 762 MobiDBLite consensus disorder prediction 677 715 - -
Apr1g2421 762 Coils Coil 598 618 - -
Apr1g2421 762 MobiDBLite consensus disorder prediction 740 762 - -
Apr1g2421 762 MobiDBLite consensus disorder prediction 516 542 - -
Apr1g2421 762 Pfam DEAD/DEAH box helicase 80 246 IPR011545 GO:0003676|GO:0005524
Apr1g2421 762 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 3 49 746 - -
Apr1g2421 762 MobiDBLite consensus disorder prediction 732 762 - -
Apr1g2421 762 SMART helicmild6 310 391 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2421 Apr-Chr1 33823536 33830655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2421 70 406 Eukaryotic Initiation Factors Gene Family AT3G19760 21.229 2.65e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2421 - K10901 gmx:100819601 1201.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2421 1 33823536 33830655 Apr1g2421 1 33823536 33830655 ECH