Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr1g2421 | ATGGAGATGCAGTTTCAGTTTGTCCCAATTGGAAGAACTCTCCGGGAAGAAGAAAAACCCACTAACGGCACCGCTCGCGAAACCCTTCGATCAAAGGTTGGAATCGAAATGCAGAAGAAGTTGCCATTGCTACTGAACGACGCCAATGCGGACAAAACGAAGAAAAAGGTATTGAGTAGCAAGGAAGCGTTGGTGAAGCTTCTAAGGTGGCATTTTGGTTACCCTGATTTTAGGGGCATGCAATTGGACGCTATTCAGGCCGTGCTCTCAGGGAAAGATTGTTTTTGCCTTATGCCAACTGGAGGAGGCAAGTCGATGTGTTATCAGATTCCTGCATTGGCAAAAACAGGAATTGTGCTTGTTGTTTGTCCTTTAATAGCCTTAATGGAAAATCAAGTAATGGCATTAAAGGAGAGAGGAATTGCTGCAGAATTTCTCTCCTCAACAAAAACGACAGATGCAAAAGTAAAGATTCATGAGGACCTTGATTCTGGAAAACCATCTACAAGGCTGCTATATGTGACTCCAGAGTTGATAGCAACACCAGGTTTTATGTCAAAGCTGAAAAAGATTTATACCAGGGGTTTGCTAAGTCTCATTGCCATAGATGAGGCGCATTGCATCTCAAGTTGGGGTCATGATTTCAGACCTAGTTACCGTAAGCTTTCATCTTTGAGGAGCCACCTACCAGATGTACCAATATTAGCTCTGACTGCCACAGCTGTGCCTAAGGTCCAGAAGGATGTAGTTGAATCCTTGCAGATGCAAAATCCATTAATACTTAAGTCTTCTTTTAATCGTCCTAATATATATTATGAAGTTAGATACAAAGATCTATTGGATAATGCTTATGCTGATTTATCTAATACACTCAAATCTATGGGAGAAATCTGTGCAATAGTTTACTGCCTTGAGCGATCGATGTGTGATGACTTGTCAACTCATCTATCCCAGAGTGGCATTTCATGTGCTGCTTATCATGCAGGACTGAATAATAAAATGCGAACTTCTGTGTTAGATGATTGGATTTCTTCCAAGATAAAAGTTGTTGTTGCCACTGTTGCTTTTGGAATGGGCATTGATAGAAAGGATGTCAGAATTGTGTGCCACTTCAATATTCCCAAGTCAATGGAAGCATTCTATCAGGAGTCAGGCAGAGCAGGACGTGATCAATTGCCATCTACTAGTCTGTTGTACTATGGGATAGATGATCGCAAAAGAATGGAATTTATATTAAGCAACTCAGGGAGCAAGAAGTTACAACCATCTAATTCACAAGAGTCGTTCAGAAAGTCCCTGATTGCTTTCAATCAGATGGTTGAATATTGTGAAGGATCTGGATGTCGTAGAAAAAGAATTCTTGAGAGTTTTGGGGAGCAGGTAACGACATCACTATGTGGAAAAACATGTGATGCCTGCAGCCATCCAAACTTAATTGCCAGATATTTGGAGGATCTCACAACTGCTTGTGCACTACACCAGAAAAATGGTTCTTCTCGAGTTTTTATCACCAGATCCACTGATGCAATTGATGGAGAACGGTTATCTGAATTCTGGAATCGGGATGAGGAAGCAAGTGGATCAGAGGAAGATATATCTGACTCAGATGGTGATGGTAATGAGGTTGTCAACAACCTAGCCCAGTCAAAGCTTCAATCCAGATTGGGGGTAAATGAAAAGCTTGCTTTGTTACAGCAGGCGGAAGAAAACTTCTATCGAAATAAGAACACAGAAAGACAGAGCAATAAAGTTGACAGAAATGCTATTTCTGATACAATGAGAGGATCAAGCAGACAAAGGTTACAAAATGCTCTAATAAAGGCTCAGCAACGGCTTGACAACTTCAAGGTTGAACCAGAAACATCAGCATCTTTTCTTGAAGATGAATGCTACAAGAAATATGGCAAGGTTGGTAAATCATTCTATTACTCACAAGTGGCAAGTACTGTAAGGTGGGTGGCAACTGCAAGTTCTATTGATCTGAAGAACCGACTTTGTGCAATTAATGCCTCCACCTCAACGAATGTCTTGTCTGAAGCTGAAGAGCCCCTCACACCGCCACCTGCTTTAGATCCTTGCGCAAAAGAAGATACTAGCAATGAACTCTCACGCAATGCTAGATCAGAAACTTCCCCGTGTGTTGTGCCTATGGAAAGTTCTTTTAATACCAAGTTGCCACAAATACCATCCTTCTCTGAATTTGTAAATAGTAGGAAAACCGAAGGGGGCCAATTAGATGACACAAAAAAGCATTCATCAAGCGTCGAAAAGAGGATGAGGATACAGTAG | 2289 | 0.4133 | MEMQFQFVPIGRTLREEEKPTNGTARETLRSKVGIEMQKKLPLLLNDANADKTKKKVLSSKEALVKLLRWHFGYPDFRGMQLDAIQAVLSGKDCFCLMPTGGGKSMCYQIPALAKTGIVLVVCPLIALMENQVMALKERGIAAEFLSSTKTTDAKVKIHEDLDSGKPSTRLLYVTPELIATPGFMSKLKKIYTRGLLSLIAIDEAHCISSWGHDFRPSYRKLSSLRSHLPDVPILALTATAVPKVQKDVVESLQMQNPLILKSSFNRPNIYYEVRYKDLLDNAYADLSNTLKSMGEICAIVYCLERSMCDDLSTHLSQSGISCAAYHAGLNNKMRTSVLDDWISSKIKVVVATVAFGMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGIDDRKRMEFILSNSGSKKLQPSNSQESFRKSLIAFNQMVEYCEGSGCRRKRILESFGEQVTTSLCGKTCDACSHPNLIARYLEDLTTACALHQKNGSSRVFITRSTDAIDGERLSEFWNRDEEASGSEEDISDSDGDGNEVVNNLAQSKLQSRLGVNEKLALLQQAEENFYRNKNTERQSNKVDRNAISDTMRGSSRQRLQNALIKAQQRLDNFKVEPETSASFLEDECYKKYGKVGKSFYYSQVASTVRWVATASSIDLKNRLCAINASTSTNVLSEAEEPLTPPPALDPCAKEDTSNELSRNARSETSPCVVPMESSFNTKLPQIPSFSEFVNSRKTEGGQLDDTKKHSSSVEKRMRIQ* | 763 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr1g2421 | 762 | TIGRFAM | recQ_fam: ATP-dependent DNA helicase, RecQ family | 67 | 477 | IPR004589 | GO:0004386|GO:0006310 | |
Apr1g2421 | 762 | Pfam | Helicase conserved C-terminal domain | 296 | 389 | IPR001650 | - | |
Apr1g2421 | 762 | SMART | ultradead3 | 73 | 275 | IPR014001 | - | |
Apr1g2421 | 762 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 290 | 433 | IPR001650 | - | |
Apr1g2421 | 762 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 85 | 259 | IPR014001 | - | |
Apr1g2421 | 762 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 117 | 411 | IPR027417 | - | |
Apr1g2421 | 762 | Pfam | RecQ zinc-binding | 404 | 473 | IPR032284 | - | |
Apr1g2421 | 762 | Gene3D | - | 267 | 492 | IPR027417 | - | |
Apr1g2421 | 762 | MobiDBLite | consensus disorder prediction | 573 | 597 | - | - | |
Apr1g2421 | 762 | CDD | DEXHc_RecQ | 66 | 266 | - | - | |
Apr1g2421 | 762 | Gene3D | - | 39 | 266 | IPR027417 | - | |
Apr1g2421 | 762 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 49 | 746 | - | - | |
Apr1g2421 | 762 | CDD | SF2_C_RecQ | 267 | 400 | - | - | |
Apr1g2421 | 762 | MobiDBLite | consensus disorder prediction | 677 | 715 | - | - | |
Apr1g2421 | 762 | Coils | Coil | 598 | 618 | - | - | |
Apr1g2421 | 762 | MobiDBLite | consensus disorder prediction | 740 | 762 | - | - | |
Apr1g2421 | 762 | MobiDBLite | consensus disorder prediction | 516 | 542 | - | - | |
Apr1g2421 | 762 | Pfam | DEAD/DEAH box helicase | 80 | 246 | IPR011545 | GO:0003676|GO:0005524 | |
Apr1g2421 | 762 | PANTHER | ATP-DEPENDENT DNA HELICASE Q-LIKE 3 | 49 | 746 | - | - | |
Apr1g2421 | 762 | MobiDBLite | consensus disorder prediction | 732 | 762 | - | - | |
Apr1g2421 | 762 | SMART | helicmild6 | 310 | 391 | IPR001650 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr1g2421 | Apr-Chr1 | 33823536 | 33830655 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr1g2421 | 70 | 406 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 21.229 | 2.65e-12 | 67.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr1g2421 | - | K10901 | gmx:100819601 | 1201.42 |