Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2415 ATGAAAAGCATATGGAAATTCATGTTCCCCGGTTGTTATAAGGGTGAGTATCCCTCACCCAAGCCCAAGAAAGTGGTTGCTACAAAGCCAAGTTCTTCTCACAGGATTTCTGTGACTGATTTGAGTTATCCAAGCACGACTTTCTCAGAGGATCTCTCCATTTCTCTAGCAGGATCTAACCTGCATGTTTTTACACTTGCTGAGCTCAAGATTATCACCCAGCATTTCTCTTCAAGTAATTTTCTAGGAGAAGGTGGGTTCGGACCAGTGCATAAGGGGTTCATTGATGACAAGCTTAGGCATGGTCTCAAGGCTCAGCCCGTGGCTGTTAAGCTCTTGGACTTGGATGGCTCGCAGGGCCATAAAGAGTGGTTGACTGAAGTTGTTTTTCTGGGGCAACTAAGGCATCCACACCTTGTGAAGCTGATAGGATACTGCTGTGAAGAAGAACACAGGCTTCTGGTGTATGAATATTTACCAAGAGGAAGCCTAGAAAATCATTTATTTAGAAGATTCTCGGCATCATTAGCATGGTCAACAAGAATGAAAATTGCTGTTGGAGCTGCAAAGTGTCTAGCCTTTCTTCATGAAGCAGAAAAACCAGTCATCTATAGAGACTTCAAAGCTTCCAACATCTTGTTAGATTCTGATTACCGTGCAAAACTCTCTGATTTAGGGTTGGCAAAAGACGGTCCCGAAGGAGATGACACCCACGTTTCAACACGAGTTATGGGCACTCACGGCTACGCAGCCCCAGAATATGTCATGACAGGTCACTTGACAGCAATGAGTGACGTGTATAGTTTTGGAGTAGTCTTGTTGGAGCTGCTAACAGGAAGAAGGTCAGTGGACAAGAATCGCCCTCCAAGGGAACAGAACCTAGTGGAATGGGCAAGGCCAATGTTAAATGATGGTAGGAAAGTTAGCAGAATAATGGATCCAAGACTTGAAGGCCAATATTCTGAGATGGGGTCCAAAAAAGCAGCTGCATTGGCCTATCAATGCCTCAGCCATAGGCCCAGAAGCAGACCCACAATGAGCACAGTGGTTAAGACACTAGAACCCCTCCAAGATTTTGACGACATTCCAATTGGAACCTTCGTTTACACAGCTCCACCGGATAATGAAGCGCACAGAGATGCAAAGGAATTTGAAGCACCTAAGAGGAGGGAAAATGGTCATCACAGGAATGGCCACAGGCATCACCCACTTAAATCCCCCAAGTCTCCAAGACCACAATCACAGCATGATCATAGACACCGAAATGGAAGAGGAAGTGGATCAAATTCTCCTCCATCAAATAAAAAAAGGCATGCAAATGTAGCTTAA 1329 0.4492 MKSIWKFMFPGCYKGEYPSPKPKKVVATKPSSSHRISVTDLSYPSTTFSEDLSISLAGSNLHVFTLAELKIITQHFSSSNFLGEGGFGPVHKGFIDDKLRHGLKAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEEEHRLLVYEYLPRGSLENHLFRRFSASLAWSTRMKIAVGAAKCLAFLHEAEKPVIYRDFKASNILLDSDYRAKLSDLGLAKDGPEGDDTHVSTRVMGTHGYAAPEYVMTGHLTAMSDVYSFGVVLLELLTGRRSVDKNRPPREQNLVEWARPMLNDGRKVSRIMDPRLEGQYSEMGSKKAAALAYQCLSHRPRSRPTMSTVVKTLEPLQDFDDIPIGTFVYTAPPDNEAHRDAKEFEAPKRRENGHHRNGHRHHPLKSPKSPRPQSQHDHRHRNGRGSGSNSPPSNKKRHANVA* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2415 442 SUPERFAMILY Protein kinase-like (PK-like) 51 354 IPR011009 -
Apr1g2415 442 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 20 403 - -
Apr1g2415 442 MobiDBLite consensus disorder prediction 425 442 - -
Apr1g2415 442 ProSiteProfiles Protein kinase domain profile. 76 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g2415 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Apr1g2415 442 MobiDBLite consensus disorder prediction 386 442 - -
Apr1g2415 442 Gene3D Phosphorylase Kinase; domain 1 43 158 - -
Apr1g2415 442 Pfam Protein tyrosine and serine/threonine kinase 80 353 IPR001245 GO:0004672|GO:0006468
Apr1g2415 442 PANTHER OS01G0588500 PROTEIN-RELATED 20 403 - -
Apr1g2415 442 MobiDBLite consensus disorder prediction 393 407 - -
Apr1g2415 442 CDD STKc_IRAK 82 356 - -
Apr1g2415 442 Gene3D Transferase(Phosphotransferase) domain 1 159 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2415 Apr-Chr1 33760344 33762630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2415 62 391 Glycoside Hydrolase AT3G07070 49.550 2.09e-100 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Apr1g2415 PK_Tyr_Ser-Thr 8.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2415 - - gmx:100783759 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2415 1 33760344 33762630 Apr10g1072 10 23099132 23101389 ECH
Apr1g2415 1 33760344 33762630 Apr1g2415 1 33760344 33762630 ECH
Apr9g2458 9 31958116 31960778 Apr1g2415 1 33760344 33762630 PCT