Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2404 ATGAACGGAAGGAACAGGTTTCCCTTTACTCCTTCACAGTGGCAAGAGCTTGAACACCAAGCTCTTATCTTCAAGTACATGGCTTCAGTTGGATGGAACTATCTTCAGATGGGTTTGGGAAGAAAAATAGACCCTGAGCCAGGTAGGTGTAGAAGGACTGATGGGAAGAAATGGAGATGCTCAAAAGAGGCATACCCAGATTCGAAGTATTGTGAGAGGCACATGCATAGAGGCAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACAACAAACAGTAACACTAATGCTTCTTCAACACCAGCGATCTCATCAATCACTAAAAATACCCCAACAACCACTCATTCTCTGTCTTCTGAGACACATCATCACCCCCCTCAACATTCTTGCTATGGCTCTTCCTTTTTCTATCATCACCCCACATCAAGGTCCTCTGGGATTGGCTTGTCTTTTGAAGACAATAGTGCTCCTTTGTTTCTTGACACTGGCTCTTGCTCTCAGTCCAACACAGATTGCAGGAGTAGGTATGTTTATGGAGAGAAAGAGGAGGTGGATGAGCATGCTTTCTTCACTGAGCCATGTGGTAATATGAAAAGCTTCACTGCTTCTTCTATGGATGATTCTTGGCAACTCAGACCTCTCACTATGAGTTCCTCATCTTCTTCTTCCAAACAAAGAAGTTGCTCTTCACTGTCCAATGATTACTCTTACTTGCAACTACACTCAAAACAAGAGCAAGATCAAGGTTGCTACATGTTTGGAAGTGGTGGTGATGGTGATGAGACACTCATCAAACATGGCAAAGAACCTCAGAAAACCATTCATCGCTTTTTTGATGAATGGCCCCACAAAGGAAGAGGAGGATCATGGCTTGATTTGGATGACAAATCATCCACAACCCAACTTTCAATTTCCATTCCCACCTCTTCTCATGATTTTCCTACCTTCAGCTCCAGTTCCAGAAGCCATCATGATGGTTGA 987 0.4326 MNGRNRFPFTPSQWQELEHQALIFKYMASVGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTTNSNTNASSTPAISSITKNTPTTTHSLSSETHHHPPQHSCYGSSFFYHHPTSRSSGIGLSFEDNSAPLFLDTGSCSQSNTDCRSRYVYGEKEEVDEHAFFTEPCGNMKSFTASSMDDSWQLRPLTMSSSSSSSKQRSCSSLSNDYSYLQLHSKQEQDQGCYMFGSGGDGDETLIKHGKEPQKTIHRFFDEWPHKGRGGSWLDLDDKSSTTQLSISIPTSSHDFPTFSSSSRSHHDG* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2404 328 MobiDBLite consensus disorder prediction 304 322 - -
Apr1g2404 328 ProSiteProfiles QLQ domain profile. 8 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Apr1g2404 328 MobiDBLite consensus disorder prediction 87 128 - -
Apr1g2404 328 MobiDBLite consensus disorder prediction 304 328 - -
Apr1g2404 328 PANTHER - 5 29 IPR031137 GO:0005634|GO:0006351|GO:0032502
Apr1g2404 328 PANTHER - 31 313 IPR031137 GO:0005634|GO:0006351|GO:0032502
Apr1g2404 328 MobiDBLite consensus disorder prediction 75 128 - -
Apr1g2404 328 SMART QLQ_2 7 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Apr1g2404 328 ProSiteProfiles WRC domain profile. 44 88 IPR014977 -
Apr1g2404 328 Pfam WRC 45 87 IPR014977 -
Apr1g2404 328 Pfam QLQ 8 29 IPR014978 GO:0005524|GO:0005634|GO:0006355
Apr1g2404 328 PANTHER GROWTH-REGULATING FACTOR 6 31 313 - -
Apr1g2404 328 PANTHER GROWTH-REGULATING FACTOR 6 5 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2404 Apr-Chr1 33662462 33664004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g2404 6 87 GRF Transcription Factor Family AT3G13960 57.658 4.59e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Apr1g2404 WRC 6.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2404 - - gmx:100781613 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2404 1 33662462 33664004 Apr1g2404 1 33662462 33664004 ECH
Apr9g2470 9 32047512 32049253 Apr1g2404 1 33662462 33664004 PCT